SMTL ID : 3zwc.1 (1 other biounit)

CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 1 (RPMFE1) COMPLEXED WITH 3S-HYDROXY-DECANOYL-COA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 21 residues within 4Å: Chain A: L.322, G.323, G.325, T.326, M.327, V.345, E.346, S.347, Q.351, A.400, V.401, F.402, E.403, L.407, K.408, N.428, T.429, S.430, H.451, F.452, S.454 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.325, A:T.326, A:M.327, A:S.347, A:Q.351, A:E.403, A:K.408, A:K.408, A:N.428, A:S.430, A:S.454

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: P.211, I.212, E.213, R.216 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.212, A:E.213 Salt bridges: A:R.216 SO4.3: 2 residues within 4Å: Chain A: S.281, G.282 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.282 Water bridges: A:A.280, A:Q.283

1 x HSC: (S)-3-HYDROXYDECANOYL-COA(Non-covalent)

HSC.4: 28 residues within 4Å: Chain A: P.40, V.41, A.43, I.49, A.79, G.80, A.81, D.82, I.83, F.86, G.92, L.93, A.94, L.95, V.116, L.118, G.119, G.120, E.123, R.138, E.143, L.146, P.150, G.151, A.152, Y.176, F.275, K.295 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.49, A:A.79, A:L.95, A:V.116, A:V.116, A:E.143, A:F.275 Hydrogen bonds: A:A.79, A:A.81, A:A.81, A:D.82, A:I.83, A:G.120, A:E.143, A:G.151, A:A.152, A:Y.176 Water bridges: A:K.295 Salt bridges: A:K.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kasaragod, P. et al., The Isomerase and Hydratase Reaction Mechanism of the Crotonase Active Site of the Multifunctional Enzyme (Type-1), as Deduced from Structures of Complexes with 3S-Hydroxy- Acyl-Coa. FEBS J. (2013)

Release Date

2012-08-08

Peptides

PEROXISOMAL BIFUNCTIONAL ENZYME: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PEROXISOMAL BIFUNCTIONAL ENZYME

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