SMTL ID : 5omo.1 (1 other biounit)

CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE-1 (RPMFE1) COMPLEXED WITH WITH 3S-HYDROXY-DECANOYL-COA AND 3-KETO-DECANOYL-COA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: P.211, I.212, E.213, R.216 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.212, A:E.213 Water bridges: A:R.216, A:R.216, A:R.216 Salt bridges: A:R.216 SO4.2: 1 residues within 4Å: Chain A: R.240 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.254 Salt bridges: A:R.240 SO4.3: 1 residues within 4Å: Chain A: R.661 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.661

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: P.568, V.569, R.570, H.626 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.569, A:R.570, A:R.570, A:H.626 GOL.5: 4 residues within 4Å: Chain A: L.247, S.281, G.282, Q.283 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.282, A:Q.283 Water bridges: A:A.280

1 x HSC: (S)-3-HYDROXYDECANOYL-COA(Non-covalent)

HSC.6: 30 residues within 4Å: Chain A: P.40, V.41, A.43, V.44, S.45, P.46, I.49, A.79, G.80, A.81, D.82, I.83, F.86, P.91, G.92, L.95, V.116, L.118, G.119, G.120, E.123, R.138, P.142, E.143, L.146, P.150, G.151, Y.176, F.275, K.295 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.49, A:A.81, A:P.91, A:P.91, A:L.95, A:V.116, A:E.143, A:F.275 Hydrogen bonds: A:A.79, A:A.81, A:A.81, A:I.83, A:G.120, A:E.143, A:G.151, A:Y.176 Salt bridges: A:K.295, A:K.295, A:K.299

1 x ZOZ: 3-KETO-DECANOYL-COA(Non-covalent)

ZOZ.7: 15 residues within 4Å: Chain A: S.430, H.451, S.454, P.455, H.457, M.459, N.501, L.504, K.534, M.535, V.540, L.543, V.548, G.672, Y.673 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:P.455, A:L.504, A:V.548 Hydrogen bonds: A:S.430, A:S.454, A:S.454, A:N.501 Water bridges: A:K.534 Salt bridges: A:K.534, A:K.534

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kasaragod, P. et al., CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 1 (RPMFE1) COMPLEXED WITH 3S-HYDROXY-DECANOYL-COA AND 3- KETO-DECANOYL-COA. Not Published

Release Date

2017-09-06

Peptides

Peroxisomal bifunctional enzyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisomal bifunctional enzyme

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