SMTL ID : 6zic.2 (1 other biounit)

CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE-1 (RPMFE1) COMPLEXED WITH 3S-HYDROXYBUTANOYL-COA AND NADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 3HC: 3-HYDROXYBUTANOYL-COENZYME A(Non-covalent)

3HC.1: 25 residues within 4Å: Chain A: P.40, V.41, A.79, G.80, A.81, D.82, I.83, F.86, V.116, L.118, G.119, G.120, E.123, P.142, E.143, L.146, I.148, P.150, G.151, Y.176, F.275, F.291, K.295, K.299, K.483 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.83, A:F.86, A:V.116, A:L.118, A:E.143, A:I.148, A:F.275 Hydrogen bonds: A:A.81, A:A.81, A:I.83, A:G.120, A:E.143, A:E.143, A:G.151, A:Y.176 Salt bridges: A:K.295, A:K.299, A:K.483, A:K.483

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: Y.508, F.512, S.541, L.546, R.553 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.553 Water bridges: A:W.550, A:R.553

1 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.3: 22 residues within 4Å: Chain A: L.322, G.323, G.325, T.326, M.327, E.346, S.347, D.348, Q.351, A.400, V.401, F.402, E.403, L.407, K.408, V.411, N.428, T.429, S.430, H.451, F.452, S.454 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.325, A:T.326, A:T.326, A:T.326, A:M.327, A:S.347, A:K.408, A:K.408, A:N.428, A:S.430, A:S.454 Water bridges: A:G.328

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: P.211, I.212, E.213, R.216 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.212, A:E.213 Salt bridges: A:R.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wierenga, R.K. et al., CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE-1 (RPMFE1) COMPLEXED WITH 3S-HYDROXYBUTANOYL-COA AND NADH. To Be Published

Release Date

2021-07-07

Peptides

Peroxisomal bifunctional enzyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
BBB

Peroxisomal bifunctional enzyme

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