SMTL ID : 6zic.1 (1 other biounit)

CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE-1 (RPMFE1) COMPLEXED WITH 3S-HYDROXYBUTANOYL-COA AND NADH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 3HC: 3-HYDROXYBUTANOYL-COENZYME A(Non-covalent)

3HC.1: 23 residues within 4Å: Chain A: P.40, V.41, A.43, A.79, G.80, A.81, D.82, I.83, H.84, F.86, V.116, L.118, G.119, G.120, E.123, P.142, E.143, L.146, P.150, G.151, A.152, Y.176, K.295 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.83, A:V.116, A:E.143 Hydrogen bonds: A:A.79, A:A.81, A:A.81, A:I.83, A:H.84, A:G.120, A:E.143, A:G.151, A:A.152, A:Y.176 Salt bridges: A:K.295, A:K.295

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: S.301, T.302, P.303, V.491, V.492, G.493, G.657, M.658, A.659, A.660 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.491, A:V.492, A:A.659 Water bridges: A:S.301, A:A.660 GOL.3: 3 residues within 4Å: Chain A: K.299, W.308, K.309 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.299, A:S.301, A:K.309 GOL.4: 5 residues within 4Å: Chain A: N.509, F.512, R.553, Y.577, S.578 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.509, A:S.578 GOL.5: 2 residues within 4Å: Chain A: K.299, R.661 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.299, A:R.661, A:R.661 GOL.7: 1 residues within 4Å: Chain A: S.740 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.740 GOL.8: 8 residues within 4Å: Chain A: A.313, Q.314, P.315, V.316, T.477, S.480, L.481, K.484 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.316, A:V.316, A:T.477, A:S.480

1 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.6: 20 residues within 4Å: Chain A: G.323, G.325, T.326, M.327, E.346, S.347, D.348, Q.351, A.400, V.401, F.402, E.403, L.407, K.408, V.411, N.428, S.430, H.451, F.452, S.454 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.325, A:T.326, A:T.326, A:M.327, A:S.347, A:S.347, A:V.401, A:E.403, A:K.408, A:N.428, A:S.430 Water bridges: A:G.328 pi-Stacking: A:F.402

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 4 residues within 4Å: Chain A: P.211, I.212, E.213, R.216 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.212, A:E.213 Water bridges: A:R.216, A:R.216 Salt bridges: A:R.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wierenga, R.K. et al., CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE-1 (RPMFE1) COMPLEXED WITH 3S-HYDROXYBUTANOYL-COA AND NADH. To Be Published

Release Date

2021-07-07

Peptides

Peroxisomal bifunctional enzyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Peroxisomal bifunctional enzyme

Related Entries With Identical Sequence