SMTL ID : 4agq.1 (1 other biounit)

Structure of the p53 core domain mutant Y220C bound to the stabilizing small molecule PhiKan5196

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x P96: 2-{[4-(diethylamino)piperidin-1-yl]methyl}-6-iodo-4-[3-(phenylamino)prop-1-yn-1-yl]phenol(Non-covalent)

P96.1: 13 residues within 4Å: Chain A: L.52, V.54, D.55, S.56, T.57, P.58, P.59, P.60, C.127, E.128, P.129, P.130, T.137 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:T.57, A:P.129, A:P.129 Hydrogen bonds: A:C.127 Water bridges: A:V.54, A:G.61, A:G.61 Halogen bonds: A:L.52

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.83, H.86, C.145, C.149 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.83, A:H.86, A:C.145, A:C.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilcken, R. et al., Halogen-Enriched Fragment Libraries as Leads for Drug Rescue of Mutant P53. J.Am.Chem.Soc. (2012)

Release Date

2012-03-21

Peptides

CELLULAR TUMOR ANTIGEN P53: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CELLULAR TUMOR ANTIGEN P53

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