SMTL ID : 5aok.2 (1 other biounit)

Structure of the p53 cancer mutant Y220C with bound small molecule PhiKan7099

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.83, H.86, C.145, C.149 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.83, A:H.86, A:C.145, A:C.149

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: L.52, P.126, C.127, E.128, T.137, T.138, I.139 Ligands: GOH.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.126, A:E.128, A:T.137, A:T.138 Water bridges: A:N.107, A:N.107

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 4 residues within 4Å: Chain A: H.22, S.23, G.24, R.189 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.24, A:R.189, A:R.189

1 x GOH: 5-[2-cyclopropyl-5-(1H-pyrrol-1-yl)-1,3-oxazol-4-yl]-1H-1,2,3,4-tetrazole

GOH.4: 12 residues within 4Å: Chain A: L.52, V.54, T.57, P.58, P.59, C.127, E.128, P.129, P.130, D.135, T.137 Ligands: GOL.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.52 Hydrogen bonds: A:T.57 Water bridges: A:V.54, A:V.54, A:T.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joerger, A.C. et al., Exploiting Transient Protein States for the Design of Small-Molecule Stabilizers of Mutant P53. Structure (2015)

Release Date

2015-12-16

Peptides

CELLULAR TUMOR ANTIGEN P53: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

CELLULAR TUMOR ANTIGEN P53

Related Entries With Identical Sequence