SMTL ID : 5ab9.1 (1 other biounit)

Structure of the p53 cancer mutant Y220C with bound small molecule 7- ethyl-3-(piperidin-4-yl)-1H-indole

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.83, H.86, C.145, C.149 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.83, A:H.86, A:C.145, A:C.149

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: H.22, S.23, G.24, R.189 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.24, A:R.189, A:R.189 Water bridges: A:H.22

2 x 92O: 7-ethyl-3-(piperidin-4-yl)-1H-indole(Non-covalent)

92O.3: 13 residues within 4Å: Chain A: L.52, V.54, D.55, T.57, P.58, C.127, E.128, P.129, P.130, D.135, C.136, T.137 Ligands: 92O.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.52, A:V.54, A:V.54, A:T.57, A:P.130 Hydrogen bonds: A:L.52, A:V.54 92O.4: 7 residues within 4Å: Chain A: T.57, P.58, P.59, P.60, C.127, P.129 Ligands: 92O.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.57, A:P.58, A:P.60 Hydrogen bonds: A:P.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joerger, A.C. et al., Exploiting Transient Protein States for the Design of Small-Molecule Stabilizers of Mutant P53. Structure (2015)

Release Date

2015-12-16

Peptides

CELLULAR TUMOR ANTIGEN P53: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CELLULAR TUMOR ANTIGEN P53

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