SMTL ID : 5aoi.2 (1 other biounit)

Structure of the p53 cancer mutant Y220C in complex with an indole- based small molecule

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.83, H.86, C.145, C.149 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.83, A:H.86, A:C.145, A:C.149

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: H.22, S.23, G.24, R.189 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.24, A:R.189, A:R.189 Water bridges: A:L.21, A:L.21, A:S.23, A:T.25, A:Y.33

1 x RZH: 2-(5-BROMO-7-ETHYL-2-METHYL-1H-INDOLE-3-YL)ETHAN-1-AMIN(Non-covalent)

RZH.3: 8 residues within 4Å: Chain A: V.54, T.57, P.58, P.59, C.127, E.128, P.129, P.130 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.54, A:P.58, A:P.129, A:P.130 Hydrogen bonds: A:V.54 Water bridges: A:V.54, A:T.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joerger, A.C. et al., Exploiting Transient Protein States for the Design of Small-Molecule Stabilizers of Mutant P53. Structure (2015)

Release Date

2015-12-16

Peptides

CELLULAR TUMOR ANTIGEN P53: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

CELLULAR TUMOR ANTIGEN P53

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