SMTL ID : 5aom.2 (1 other biounit)

Structure of the p53 cancer mutant Y220C with bound small molecule PhiKan883

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

2 x FY8: N-(5-chloranyl-2-oxidanyl-phenyl)piperidine-4-carboxamide(Non-covalent)

FY8.1: 14 residues within 4Å: Chain A: L.52, W.53, V.54, D.55, T.57, P.58, C.127, E.128, P.129, P.130, D.135, C.136, T.137 Ligands: FY8.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.54, A:T.137 Hydrogen bonds: A:V.54, A:D.135, A:D.135, A:T.137 FY8.2: 9 residues within 4Å: Chain A: T.57, P.58, P.59, P.60, G.61, T.62, C.127, P.129 Ligands: FY8.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.57, A:P.60, A:P.129 Hydrogen bonds: A:G.61 Water bridges: A:R.109

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.83, H.86, C.145, C.149 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.83, A:H.86, A:C.145, A:C.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joerger, A.C. et al., Exploiting Transient Protein States for the Design of Small-Molecule Stabilizers of Mutant P53. Structure (2015)

Release Date

2015-12-16

Peptides

CELLULAR TUMOR ANTIGEN P53: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

CELLULAR TUMOR ANTIGEN P53

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