SMTL ID : 6ggc.1 (1 other biounit)

p53 cancer mutant Y220C in complex with small-molecule stabilizer PK9320

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.83, H.86, C.145, C.149 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.83, A:H.86, A:C.145, A:C.149

1 x EXN: [9-ethyl-7-(furan-2-yl)carbazol-3-yl]methyl-methyl-azanium(Non-covalent)

EXN.2: 12 residues within 4Å: Chain A: L.52, W.53, V.54, T.57, P.58, C.127, E.128, P.129, P.130, D.135, C.136, T.137 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.52, A:V.54, A:V.54, A:P.129 Hydrogen bonds: A:D.135

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: Y.146, S.148, C.182, A.183 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.148, A:A.183 Water bridges: A:C.184 EDO.4: 2 residues within 4Å: Chain A: N.38, S.176 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.38, A:S.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bauer, M.R. et al., A structure-guided molecular chaperone approach for restoring the transcriptional activity of the p53 cancer mutant Y220C. Future Med Chem (2019)

Release Date

2019-05-22

Peptides

Cellular tumor antigen p53: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cellular tumor antigen p53

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