SMTL ID : 4k9t.1

Complex of CYP3A4 with a desoxyritonavir analog

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 29 residues within 4Å: Chain A: R.85, I.98, S.99, W.106, R.110, I.281, F.282, A.285, T.289, V.293, L.344, I.349, A.350, L.353, R.355, P.414, F.415, G.416, S.417, R.420, N.421, C.422, I.423, G.424, F.427, A.428, M.432 Ligands: 1RD.2, 1RD.3 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:I.98, A:I.281, A:F.282, A:A.285, A:V.293, A:L.344, A:I.349, A:I.349, A:A.350, A:L.353, A:F.415, A:I.423, A:F.427 Hydrogen bonds: A:S.417 Salt bridges: A:R.85, A:R.85, A:R.110, A:R.355, A:R.420 Metal complexes: A:C.422

2 x 1RD: N~2~-(methyl{[2-(propan-2-yl)-1,3-thiazol-4-yl]methyl}carbamoyl)-N-(4-{[(1,3-thiazol-5-ylmethoxy)carbonyl]amino}butyl)-L-valinamide(Non-covalent)

1RD.2: 13 residues within 4Å: Chain A: Y.33, F.37, D.56, F.88, F.195, L.196, F.200, T.204, A.285, T.289, G.461 Ligands: HEM.1, 1RD.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.200, A:F.200 pi-Stacking: A:Y.33, A:F.37 1RD.3: 18 residues within 4Å: Chain A: R.85, R.86, P.87, F.88, V.91, S.99, I.100, F.193, F.195, V.220, F.221, I.281, F.284, A.350, R.352, E.354 Ligands: HEM.1, 1RD.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.100, A:F.193, A:F.195, A:F.221, A:I.281, A:F.284, A:F.284 Hydrogen bonds: A:F.88, A:R.352

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sevrioukova, I.F. et al., Dissecting Cytochrome P450 3A4-Ligand Interactions Using Ritonavir Analogues. Biochemistry (2013)

Release Date

2013-06-19

Peptides

Cytochrome P450 3A4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 3A4

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