- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 4 x MWV: (1S,2S)-2-(2-{[3-(1H-benzimidazol-2-yl)propyl](methyl)amino}ethyl)-6-fluoro-1-(propan-2-yl)-1,2,3,4-tetrahydronaphthalen-2-yl methoxyacetate(Non-covalent)
MWV.2: 15 residues within 4Å:- Chain A: F.37, S.99, R.192, F.193, F.195, I.281, F.284, A.285, T.289, I.349, A.350, M.351, R.352, E.354
- Ligands: HEM.1
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:F.195, A:F.284, A:F.284, A:A.285, A:T.289
- Hydrogen bonds: A:R.192
- Salt bridges: A:R.192
- pi-Stacking: A:F.37
MWV.7: 15 residues within 4Å:- Chain B: F.37, S.99, R.192, F.193, F.195, I.281, F.284, A.285, T.289, I.349, A.350, M.351, R.352, E.354
- Ligands: HEM.6
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:F.195, B:F.284, B:F.284, B:A.285, B:T.289
- Hydrogen bonds: B:R.192
- Salt bridges: B:R.192
- pi-Stacking: B:F.37
MWV.12: 15 residues within 4Å:- Chain C: F.37, S.99, R.192, F.193, F.195, I.281, F.284, A.285, T.289, I.349, A.350, M.351, R.352, E.354
- Ligands: HEM.11
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:F.195, C:F.284, C:F.284, C:A.285, C:T.289
- Hydrogen bonds: C:R.192
- Salt bridges: C:R.192
- pi-Stacking: C:F.37
MWV.17: 15 residues within 4Å:- Chain D: F.37, S.99, R.192, F.193, F.195, I.281, F.284, A.285, T.289, I.349, A.350, M.351, R.352, E.354
- Ligands: HEM.16
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:F.195, D:F.284, D:F.284, D:A.285, D:T.289
- Hydrogen bonds: D:R.192
- Salt bridges: D:R.192
- pi-Stacking: D:F.37
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 4 residues within 4Å:- Chain A: G.416, S.417, N.421, M.425
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.417, A:N.421
- Water bridges: A:G.418
EDO.4: 4 residues within 4Å:- Chain A: F.183, S.232, R.235, M.236
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.232
EDO.8: 4 residues within 4Å:- Chain B: G.416, S.417, N.421, M.425
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.417, B:N.421
- Water bridges: B:G.418
EDO.9: 4 residues within 4Å:- Chain B: F.183, S.232, R.235, M.236
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.232
EDO.13: 4 residues within 4Å:- Chain C: G.416, S.417, N.421, M.425
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:S.417, C:N.421
- Water bridges: C:G.418
EDO.14: 4 residues within 4Å:- Chain C: F.183, S.232, R.235, M.236
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:S.232
EDO.18: 4 residues within 4Å:- Chain D: G.416, S.417, N.421, M.425
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:S.417, D:N.421
- Water bridges: D:G.418
EDO.19: 4 residues within 4Å:- Chain D: F.183, S.232, R.235, M.236
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:S.232
- 4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.5: 4 residues within 4Å:- Chain A: F.199, I.218, C.219
- Chain C: I.218
1 PLIP interactions:1 interactions with chain A- pi-Cation interactions: A:F.199
DMS.10: 4 residues within 4Å:- Chain B: F.199, I.218, C.219
- Chain D: I.218
1 PLIP interactions:1 interactions with chain B- pi-Cation interactions: B:F.199
DMS.15: 4 residues within 4Å:- Chain A: I.218
- Chain C: F.199, I.218, C.219
1 PLIP interactions:1 interactions with chain C- pi-Cation interactions: C:F.199
DMS.20: 4 residues within 4Å:- Chain B: I.218
- Chain D: F.199, I.218, C.219
1 PLIP interactions:1 interactions with chain D- pi-Cation interactions: D:F.199
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sevrioukova, I.F., Structural Insights into the Interaction of Cytochrome P450 3A4 with Suicide Substrates: Mibefradil, Azamulin and 6',7'-Dihydroxybergamottin. Int J Mol Sci (2019)
- Release Date
- 2019-09-11
- Peptides
- Cytochrome P450 3A4: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
SMTL ID : 6oo9.1
Human CYP3A4 bound to a drug mibefradil
Cytochrome P450 3A4
Toggle Identical (ABCD)Related Entries With Identical Sequence
3tjs.1 | 3ua1.1 | 4d78.1 | 4d7d.1 | 4i3q.1 | 4i3q.2 | 4i4g.1 | 4i4g.2 | 4i4h.1 | 4i4h.2 | 4k9t.1 | 4k9u.1 | 4k9v.1 | 4k9w.1 | 4k9w.2 | 4k9w.3 | 4k9w.4 | 4k9x.1 | 5a1p.1 | 5a1r.1 | 5g5j.1 | 5te8.1 | 5vc0.1 | 5vc0.2 | 5vcc.1 | 5vcc.2 | 6bcz.1 | 6bd5.1 | 6bd6.1 | 6bd7.1 more...less...6bd8.1 | 6bdh.1 | 6bdi.1 | 6bdk.1 | 6bdm.1 | 6da2.1 | 6da3.1 | 6da5.1 | 6da8.1 | 6daa.1 | 6dab.1 | 6dac.1 | 6dag.1 | 6daj.1 | 6dal.1 | 6ma6.1 | 6ma6.2 | 6ma8.1 | 6ooa.1 | 6oob.1 | 6une.1 | 6une.2 | 6ung.1 | 6ung.2 | 6unh.1 | 6unh.2 | 6uni.1 | 6uni.2 | 6unj.1 | 6unj.2 | 6unj.3 | 6unk.1 | 6unk.2 | 6unl.1 | 6unl.2 | 6unm.1 | 6unm.2 | 6unm.3 | 7ks8.1 | 7ksa.1 | 7kvh.1 | 7kvi.1 | 7kvj.1 | 7kvm.1 | 7kvn.1 | 7kvo.1 | 7kvp.1 | 7kvq.1 | 7uay.1 | 7uaz.1 | 7uf9.1 | 7ufa.1 | 7ufb.1 | 7ufc.1 | 7ufd.1 | 8dyc.1 | 8ewd.1 | 8ewe.1 | 8ewl.1 | 8ewm.1 | 8ewn.1 | 8ewp.1 | 8ewq.1 | 8ewr.1 | 8ews.1 | 8exb.1 | 8so1.1 | 8so2.1 | 9bbb.1