SMTL ID : 4k9u.1

Complex of human CYP3A4 with a desoxyritonavir analog

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: R.85, I.98, S.99, W.106, R.110, I.281, F.282, A.285, T.289, V.293, L.353, R.355, P.414, F.415, G.416, S.417, R.420, N.421, C.422, I.423, G.424, F.427, A.428, M.432 Ligands: 5AW.2, 5AW.3 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:I.98, A:I.281, A:F.282, A:A.285, A:V.293, A:F.415, A:F.427 Hydrogen bonds: A:S.417, A:S.417 Salt bridges: A:R.85, A:R.85, A:R.110, A:R.355, A:R.420 Metal complexes: A:C.422

2 x 5AW: N~2~-(methyl{[2-(propan-2-yl)-1,3-thiazol-4-yl]methyl}carbamoyl)-N-[(2S,5S)-5-{[(1,3-thiazol-5-ylmethoxy)carbonyl]amino}hexan-2-yl]-D-valinamide(Non-covalent)

5AW.2: 10 residues within 4Å: Chain A: K.188, K.189, F.200, V.220, F.284, A.285, T.289, L.462 Ligands: HEM.1, 5AW.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.200, A:L.462 5AW.3: 13 residues within 4Å: Chain A: F.88, S.99, I.100, L.196, D.197, F.284, E.288, G.460, G.461, L.462, Q.464 Ligands: HEM.1, 5AW.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:D.197, A:F.284, A:E.288, A:L.462 Hydrogen bonds: A:S.99, A:G.461, A:L.462, A:Q.464 pi-Cation interactions: A:R.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sevrioukova, I.F. et al., Dissecting Cytochrome P450 3A4-Ligand Interactions Using Ritonavir Analogues. Biochemistry (2013)

Release Date

2013-06-19

Peptides

Cytochrome P450 3A4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 3A4

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