- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.1: 28 residues within 4Å:- Chain A: R.85, I.98, S.99, W.106, R.110, F.117, F.282, A.285, G.286, T.289, V.293, I.349, A.350, L.353, R.355, P.414, F.415, G.416, S.417, R.420, N.421, C.422, I.423, G.424, F.427, A.428, M.432
- Ligands: CFF.2
19 PLIP interactions:19 interactions with chain A,- Hydrophobic interactions: A:I.98, A:F.117, A:F.282, A:V.293, A:I.349, A:A.350, A:L.353, A:F.415, A:F.415, A:I.423, A:F.427
- Hydrogen bonds: A:S.417
- Water bridges: A:R.355
- Salt bridges: A:R.85, A:R.85, A:R.110, A:R.355, A:R.420
- Metal complexes: A:C.422
HEM.5: 28 residues within 4Å:- Chain B: R.85, I.98, S.99, W.106, R.110, F.117, F.282, A.285, G.286, T.289, V.293, I.349, A.350, L.353, R.355, P.414, F.415, G.416, S.417, R.420, N.421, C.422, I.423, G.424, F.427, A.428, M.432
- Ligands: CFF.6
19 PLIP interactions:19 interactions with chain B,- Hydrophobic interactions: B:I.98, B:F.117, B:F.282, B:V.293, B:I.349, B:A.350, B:L.353, B:F.415, B:F.415, B:I.423, B:F.427
- Hydrogen bonds: B:S.417
- Water bridges: B:R.355
- Salt bridges: B:R.85, B:R.85, B:R.110, B:R.355, B:R.420
- Metal complexes: B:C.422
- 6 x CFF: CAFFEINE(Non-covalent)
CFF.2: 7 residues within 4Å:- Chain A: R.85, S.99, R.192, A.285, T.289, A.350
- Ligands: HEM.1
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.192, A:R.192
- Water bridges: A:S.99
- pi-Cation interactions: A:R.192, A:R.192
CFF.3: 7 residues within 4Å:- Chain A: F.37, D.56, R.86, F.88, F.195, T.204, E.354
4 PLIP interactions:4 interactions with chain A- Water bridges: A:R.86
- pi-Stacking: A:F.195, A:F.195
- pi-Cation interactions: A:R.86
CFF.4: 5 residues within 4Å:- Chain A: D.197, F.199, F.200, C.219, V.220
2 PLIP interactions:2 interactions with chain A- pi-Stacking: A:F.199, A:F.199
CFF.6: 7 residues within 4Å:- Chain B: R.85, S.99, R.192, A.285, T.289, A.350
- Ligands: HEM.5
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.192, B:R.192
- Water bridges: B:S.99
- pi-Cation interactions: B:R.192, B:R.192
CFF.7: 7 residues within 4Å:- Chain B: F.37, D.56, R.86, F.88, F.195, T.204, E.354
4 PLIP interactions:4 interactions with chain B- Water bridges: B:R.86
- pi-Stacking: B:F.195, B:F.195
- pi-Cation interactions: B:R.86
CFF.8: 5 residues within 4Å:- Chain B: D.197, F.199, F.200, C.219, V.220
2 PLIP interactions:2 interactions with chain B- pi-Stacking: B:F.199, B:F.199
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sevrioukova, I.F., Interaction of CYP3A4 with caffeine: First insights into multiple substrate binding. J.Biol.Chem. (2023)
- Release Date
- 2023-08-02
- Peptides
- Cytochrome P450 3A4: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
SMTL ID : 8so1.1
Human CYP3A4 bound to three caffeine molecules
Cytochrome P450 3A4
Toggle Identical (AB)Related Entries With Identical Sequence
3tjs.1 | 3ua1.1 | 4d78.1 | 4d7d.1 | 4i3q.1 | 4i3q.2 | 4i4g.1 | 4i4g.2 | 4i4h.1 | 4i4h.2 | 4k9t.1 | 4k9u.1 | 4k9v.1 | 4k9w.1 | 4k9w.2 | 4k9w.3 | 4k9w.4 | 4k9x.1 | 5a1p.1 | 5a1r.1 | 5g5j.1 | 5te8.1 | 5vc0.1 | 5vc0.2 | 5vcc.1 | 5vcc.2 | 6bcz.1 | 6bd5.1 | 6bd6.1 | 6bd7.1 more...less...6bd8.1 | 6bdh.1 | 6bdi.1 | 6bdk.1 | 6bdm.1 | 6da2.1 | 6da3.1 | 6da5.1 | 6da8.1 | 6daa.1 | 6dab.1 | 6dac.1 | 6dag.1 | 6daj.1 | 6dal.1 | 6ma6.1 | 6ma6.2 | 6ma8.1 | 6oo9.1 | 6ooa.1 | 6oob.1 | 6une.1 | 6une.2 | 6ung.1 | 6ung.2 | 6unh.1 | 6unh.2 | 6uni.1 | 6uni.2 | 6unj.1 | 6unj.2 | 6unj.3 | 6unk.1 | 6unk.2 | 6unl.1 | 6unl.2 | 6unm.1 | 6unm.2 | 6unm.3 | 7ks8.1 | 7ksa.1 | 7kvh.1 | 7kvi.1 | 7kvj.1 | 7kvm.1 | 7kvn.1 | 7kvo.1 | 7kvp.1 | 7kvq.1 | 7uay.1 | 7uaz.1 | 7uf9.1 | 7ufa.1 | 7ufb.1 | 7ufc.1 | 7ufd.1 | 8dyc.1 | 8ewd.1 | 8ewe.1 | 8ewl.1 | 8ewm.1 | 8ewn.1 | 8ewp.1 | 8ewq.1 | 8ewr.1 | 8ews.1 | 8exb.1 | 8so2.1