- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.83 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.1: 28 residues within 4Å:- Chain A: R.85, I.98, S.99, W.106, R.110, I.281, F.282, A.285, G.286, T.289, V.293, I.349, A.350, L.353, R.355, P.414, F.415, G.416, S.417, R.420, N.421, C.422, I.423, G.424, F.427, A.428, M.432
- Ligands: QDP.2
18 PLIP interactions:18 interactions with chain A,- Hydrophobic interactions: A:I.98, A:I.281, A:F.282, A:A.285, A:V.293, A:I.349, A:A.350, A:L.353, A:F.415, A:I.423, A:F.427
- Hydrogen bonds: A:S.417
- Salt bridges: A:R.85, A:R.85, A:R.110, A:R.355, A:R.420
- Metal complexes: A:C.422
HEM.3: 28 residues within 4Å:- Chain B: R.85, I.98, S.99, W.106, R.110, I.281, F.282, A.285, G.286, T.289, V.293, I.349, A.350, L.353, R.355, P.414, F.415, G.416, S.417, R.420, N.421, C.422, I.423, G.424, F.427, A.428, M.432
- Ligands: QDP.4
18 PLIP interactions:18 interactions with chain B,- Hydrophobic interactions: B:I.98, B:I.281, B:F.282, B:A.285, B:V.293, B:I.349, B:A.350, B:L.353, B:F.415, B:I.423, B:F.427
- Hydrogen bonds: B:S.417
- Salt bridges: B:R.85, B:R.85, B:R.110, B:R.355, B:R.420
- Metal complexes: B:C.422
HEM.5: 25 residues within 4Å:- Chain C: R.85, I.98, S.99, W.106, R.110, F.282, A.285, G.286, T.289, L.344, I.349, A.350, L.353, R.355, P.414, F.415, G.416, R.420, N.421, C.422, I.423, G.424, F.427, A.428, M.432
16 PLIP interactions:16 interactions with chain C,- Hydrophobic interactions: C:I.98, C:F.282, C:A.285, C:L.344, C:I.349, C:I.349, C:A.350, C:F.415, C:I.423, C:F.427
- Salt bridges: C:R.85, C:R.85, C:R.110, C:R.355, C:R.420
- Metal complexes: C:C.422
HEM.6: 25 residues within 4Å:- Chain D: R.85, I.98, S.99, W.106, R.110, F.282, A.285, G.286, T.289, L.344, I.349, A.350, L.353, R.355, P.414, F.415, G.416, R.420, N.421, C.422, I.423, G.424, F.427, A.428, M.432
16 PLIP interactions:16 interactions with chain D,- Hydrophobic interactions: D:I.98, D:F.282, D:A.285, D:L.344, D:I.349, D:I.349, D:A.350, D:F.415, D:I.423, D:F.427
- Salt bridges: D:R.85, D:R.85, D:R.110, D:R.355, D:R.420
- Metal complexes: D:C.422
- 2 x QDP: tert-butyl [(2S)-1-(naphthalen-1-yl)-3-{[(2S)-3-(naphthalen-1-yl)-1-oxo-1-{(E)-[2-(pyridin-3-yl)ethylidene]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate(Non-covalent)
QDP.2: 12 residues within 4Å:- Chain A: R.85, R.86, F.88, S.99, I.100, F.221, F.284, A.285, T.289, I.349, E.354
- Ligands: HEM.1
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:R.86, A:F.88, A:F.221, A:F.284, A:A.285, A:T.289
- Hydrogen bonds: A:R.86, A:S.99, A:E.354
- pi-Stacking: A:F.284
QDP.4: 12 residues within 4Å:- Chain B: R.85, R.86, F.88, S.99, I.100, F.221, F.284, A.285, T.289, I.349, E.354
- Ligands: HEM.3
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:R.86, B:F.88, B:F.221, B:F.284, B:A.285, B:T.289
- Hydrogen bonds: B:R.86, B:S.99
- pi-Stacking: B:F.284
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Samuels, E.R. et al., An increase in side-group hydrophobicity largely improves the potency of ritonavir-like inhibitors of CYP3A4. Bioorg.Med.Chem. (2020)
- Release Date
- 2020-02-05
- Peptides
- Cytochrome P450 3A4: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
BD
B
SMTL ID : 6unm.3 (2 other biounits)
CYP3A4 bound to an inhibitor
Cytochrome P450 3A4
Toggle Identical (AB) Toggle Identical (CD)Related Entries With Identical Sequence
3tjs.1 | 3ua1.1 | 4d78.1 | 4d7d.1 | 4i3q.1 | 4i3q.2 | 4i4g.1 | 4i4g.2 | 4i4h.1 | 4i4h.2 | 4k9t.1 | 4k9u.1 | 4k9v.1 | 4k9w.1 | 4k9w.2 | 4k9w.3 | 4k9w.4 | 4k9x.1 | 5a1p.1 | 5a1r.1 | 5g5j.1 | 5te8.1 | 5vc0.1 | 5vc0.2 | 5vcc.1 | 5vcc.2 | 6bcz.1 | 6bd5.1 | 6bd6.1 | 6bd7.1 more...less...6bd8.1 | 6bdh.1 | 6bdi.1 | 6bdk.1 | 6bdm.1 | 6da2.1 | 6da3.1 | 6da5.1 | 6da8.1 | 6daa.1 | 6dab.1 | 6dac.1 | 6dag.1 | 6daj.1 | 6dal.1 | 6ma6.1 | 6ma6.2 | 6ma8.1 | 6oo9.1 | 6ooa.1 | 6oob.1 | 6une.1 | 6une.2 | 6ung.1 | 6ung.2 | 6unh.1 | 6unh.2 | 6uni.1 | 6uni.2 | 6unj.1 | 6unj.2 | 6unj.3 | 6unk.1 | 6unk.2 | 6unl.1 | 6unl.2 | 6unm.1 | 6unm.2 | 7ks8.1 | 7ksa.1 | 7kvh.1 | 7kvi.1 | 7kvj.1 | 7kvm.1 | 7kvn.1 | 7kvo.1 | 7kvp.1 | 7kvq.1 | 7uay.1 | 7uaz.1 | 7uf9.1 | 7ufa.1 | 7ufb.1 | 7ufc.1 | 7ufd.1 | 8dyc.1 | 8ewd.1 | 8ewe.1 | 8ewl.1 | 8ewm.1 | 8ewn.1 | 8ewp.1 | 8ewq.1 | 8ewr.1 | 8ews.1 | 8exb.1 | 8so1.1 | 8so2.1 | 9bbb.1