SMTL ID : 4lcf.1

Crystal structure of the Pseudomonas aeruginosa LPXC/LPC-014 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: H.162, E.219 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.162, A:E.219, A:E.219 ZN.2: 2 residues within 4Å: Chain A: Q.269, R.272 No protein-ligand interaction detected (PLIP) ZN.11: 4 residues within 4Å: Chain A: H.78, H.237, D.241 Ligands: 1WL.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.78, A:H.237, A:D.241, A:D.241

1 x 1WL: Nalpha-{4-[4-(4-aminophenyl)buta-1,3-diyn-1-yl]benzoyl}-N-hydroxy-L-histidinamide(Non-covalent)

1WL.3: 16 residues within 4Å: Chain A: L.18, M.62, E.77, H.78, T.190, F.191, I.197, G.209, S.210, V.211, V.216, H.237, D.241, H.264 Ligands: NO3.9, ZN.11 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.18, A:T.190, A:I.197, A:I.197, A:I.197, A:V.211, A:V.216 Hydrogen bonds: A:M.62, A:T.190, A:T.190, A:F.191 Water bridges: A:K.238

11 x NO3: NITRATE ION(Non-functional Binders)

NO3.4: 8 residues within 4Å: Chain A: I.158, R.168, T.169, Q.170, D.232, E.233, F.234, V.235 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.169, A:Q.170, A:D.232, A:F.234, A:V.235 Water bridges: A:E.231, A:D.232 NO3.5: 5 residues within 4Å: Chain A: E.134, R.143, V.145, R.258, F.260 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.134, A:R.143, A:R.143, A:R.258 NO3.6: 4 residues within 4Å: Chain A: I.158, D.159, F.160, K.261 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.159 NO3.7: 3 residues within 4Å: Chain A: R.189, D.226, R.229 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.189, A:D.226, A:R.229, A:R.229 Water bridges: A:R.189, A:N.224, A:D.226, A:D.226 NO3.8: 8 residues within 4Å: Chain A: E.139, K.142, K.261, S.262, G.263, H.264, A.265, L.266 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.142, A:G.263, A:G.263, A:A.265, A:L.266 Water bridges: A:K.142, A:K.142, A:H.264 NO3.9: 5 residues within 4Å: Chain A: T.61, K.238, G.263, H.264 Ligands: 1WL.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.61, A:K.238, A:H.264 Water bridges: A:K.238 NO3.10: 5 residues within 4Å: Chain A: T.6, P.30, A.31, P.32, Q.122 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.122 NO3.12: 4 residues within 4Å: Chain A: R.12, A.13, T.14, Y.25 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.12, A:A.13, A:T.27 NO3.13: 3 residues within 4Å: Chain A: P.148, F.149, D.150 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.130, A:F.149, A:F.149, A:D.150 NO3.14: 4 residues within 4Å: Chain A: Y.230, E.231, D.232, K.236 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.231, A:D.232, A:K.236, A:K.236 NO3.15: 6 residues within 4Å: Chain A: F.152, F.176, S.177, P.293, I.294, S.295 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.152, A:S.295 Water bridges: A:S.177, A:S.177, A:S.177, A:P.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, X. et al., Synthesis, Structure, and Antibiotic Activity of Aryl-Substituted LpxC Inhibitors. J.Med.Chem. (2013)

Release Date

2013-08-21

Peptides

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

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