SMTL ID : 4lcg.1

Crystal structure of the Pseudomonas aeruginosa LPXC/LPC-050 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.78, T.190, H.237, D.241 Ligands: 1WM.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.78, A:H.237, A:D.241, A:D.241 ZN.2: 2 residues within 4Å: Chain A: H.162, E.219 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.162, A:E.219, A:E.219

1 x 1WM: (betaS)-Nalpha-{4-[4-(4-aminophenyl)buta-1,3-diyn-1-yl]benzoyl}-N,beta-dihydroxy-L-tyrosinamide(Non-covalent)

1WM.3: 19 residues within 4Å: Chain A: L.18, M.62, E.77, H.78, T.190, F.191, F.193, I.197, R.201, G.209, S.210, V.211, V.216, H.237, K.238, D.241, H.264 Ligands: ZN.1, NO3.19 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.18, A:F.191, A:I.197, A:I.197, A:V.216 Hydrogen bonds: A:E.77, A:F.191, A:D.241, A:H.264 Water bridges: A:T.190, A:T.190, A:D.196, A:V.211, A:K.238

16 x NO3: NITRATE ION(Non-functional Binders)

NO3.4: 8 residues within 4Å: Chain A: I.158, R.168, T.169, Q.170, D.232, E.233, F.234, V.235 Ligand excluded by PLIP NO3.5: 4 residues within 4Å: Chain A: I.158, D.159, F.160, K.261 Ligand excluded by PLIP NO3.6: 3 residues within 4Å: Chain A: M.103, D.104, P.109 Ligand excluded by PLIP NO3.7: 2 residues within 4Å: Chain A: I.10, R.12 Ligand excluded by PLIP NO3.8: 3 residues within 4Å: Chain A: R.189, D.226, R.229 Ligand excluded by PLIP NO3.9: 4 residues within 4Å: Chain A: R.12, A.13, T.14, Y.25 Ligand excluded by PLIP NO3.10: 5 residues within 4Å: Chain A: Y.230, E.231, D.232, K.236 Ligands: NO3.16 Ligand excluded by PLIP NO3.11: 3 residues within 4Å: Chain A: P.148, F.149, D.150 Ligand excluded by PLIP NO3.12: 6 residues within 4Å: Chain A: E.139, K.142, G.263, H.264, A.265, L.266 Ligand excluded by PLIP NO3.13: 4 residues within 4Å: Chain A: S.136, V.137, E.138, R.143 Ligand excluded by PLIP NO3.14: 2 residues within 4Å: Chain A: L.44, D.45 Ligand excluded by PLIP NO3.15: 6 residues within 4Å: Chain A: F.152, F.176, S.177, P.293, I.294, S.295 Ligand excluded by PLIP NO3.16: 4 residues within 4Å: Chain A: E.184, Y.230, K.236 Ligands: NO3.10 Ligand excluded by PLIP NO3.17: 3 residues within 4Å: Chain A: Q.269, R.272, T.273 Ligand excluded by PLIP NO3.18: 5 residues within 4Å: Chain A: F.176, S.177, S.178, T.179, S.180 Ligand excluded by PLIP NO3.19: 6 residues within 4Å: Chain A: H.19, M.62, L.200, L.205, A.206 Ligands: 1WM.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, X. et al., Synthesis, Structure, and Antibiotic Activity of Aryl-Substituted LpxC Inhibitors. J.Med.Chem. (2013)

Release Date

2013-08-21

Peptides

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

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