- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.31 Å
- Oligo State
- hetero-oligomer
- Ligands
- 220 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 30 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)
K.131: 3 residues within 4Å:- Chain A: G.289, U.300, G.301
Ligand excluded by PLIPK.132: 3 residues within 4Å:- Chain A: U.128, U.225, G.226
Ligand excluded by PLIPK.133: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPK.134: 1 residues within 4Å:- Chain A: G.873
Ligand excluded by PLIPK.135: 2 residues within 4Å:- Chain A: C.287, G.301
Ligand excluded by PLIPK.136: 2 residues within 4Å:- Chain A: G.560, G.561
Ligand excluded by PLIPK.137: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPK.138: 4 residues within 4Å:- Chain A: G.253, G.254, G.262
- Ligands: MG.3
Ligand excluded by PLIPK.139: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPK.140: 1 residues within 4Å:- Chain A: U.15
Ligand excluded by PLIPK.141: 2 residues within 4Å:- Chain A: C.520
- Ligands: K.145
Ligand excluded by PLIPK.142: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPK.143: 2 residues within 4Å:- Chain A: A.480, A.481
Ligand excluded by PLIPK.144: 2 residues within 4Å:- Chain A: G.579
- Ligands: MG.8
Ligand excluded by PLIPK.145: 4 residues within 4Å:- Chain A: U.496, U.518, A.519
- Ligands: K.141
Ligand excluded by PLIPK.146: 2 residues within 4Å:- Chain A: U.177, G.178
Ligand excluded by PLIPK.147: 2 residues within 4Å:- Chain A: G.459, G.460
Ligand excluded by PLIPK.148: 2 residues within 4Å:- Chain A: G.541, G.542
Ligand excluded by PLIPK.149: 1 residues within 4Å:- Chain A: G.476
Ligand excluded by PLIPK.150: 1 residues within 4Å:- Chain A: G.222
Ligand excluded by PLIPK.151: 1 residues within 4Å:- Ligands: MG.177
Ligand excluded by PLIPK.152: 2 residues within 4Å:- Chain A: G.726
- Ligands: MG.15
Ligand excluded by PLIPK.153: 1 residues within 4Å:- Chain A: G.755
Ligand excluded by PLIPK.154: 3 residues within 4Å:- Chain A: C.618, G.619, U.620
Ligand excluded by PLIPK.155: 1 residues within 4Å:- Chain A: G.162
Ligand excluded by PLIPK.156: 3 residues within 4Å:- Chain A: C.840, U.841
- Chain E: E.83
Ligand excluded by PLIPK.157: 2 residues within 4Å:- Chain A: G.501, U.515
Ligand excluded by PLIPK.158: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPK.159: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPK.160: 1 residues within 4Å:- Ligands: MG.170
Ligand excluded by PLIP- 6 x NMY: NEOMYCIN(Non-functional Binders)(Non-covalent)
NMY.232: 12 residues within 4Å:- Chain A: G.1388, U.1389, C.1390, A.1391, C.1392, G.1467, C.1468, G.1469, A.1470, A.1471, G.1472, U.1473
No protein-ligand interaction detected (PLIP)NMY.233: 10 residues within 4Å:- Chain A: G.551, G.552, C.553, G.554, G.559, G.805, G.852, C.853, C.855
- Chain H: K.88
2 PLIP interactions:2 interactions with chain H- Hydrogen bonds: H:K.88, H:K.88
NMY.234: 13 residues within 4Å:- Chain A: G.594, A.595, C.596, C.597, A.598, G.600, A.606, C.607, C.608, G.609, U.610
- Chain D: E.81, K.84
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:K.84, D:K.84
- Salt bridges: D:K.84
NMY.235: 13 residues within 4Å:- Chain A: A.113, A.114, C.115, G.116, C.117, G.232, C.233, G.234, U.235, C.236, C.237, G.277, A.278
2 PLIP interactions:2 interactions with chain Q- Hydrogen bonds: Q:K.40, Q:K.40
NMY.236: 15 residues within 4Å:- Chain A: U.46, G.106, G.107, C.303, C.304, G.305, C.351, A.352, A.385, C.386, G.387, G.388, A.389
- Chain P: R.28, D.29
3 PLIP interactions:3 interactions with chain P- Hydrogen bonds: P:R.28, P:D.29, P:D.29
NMY.237: 4 residues within 4Å:- Chain A: C.59, A.60, U.383, G.384
No protein-ligand interaction detected (PLIP)- 2 x ZN: ZINC ION(Non-covalent)
ZN.243: 4 residues within 4Å:- Chain D: C.9, C.12, C.26, C.31
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.9, D:C.12, D:C.26, D:C.31
ZN.253: 4 residues within 4Å:- Chain N: C.24, C.27, C.40, C.43
4 PLIP interactions:4 interactions with chain N- Metal complexes: N:C.24, N:C.27, N:C.40, N:C.43
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Demirci, H. et al., Crystal Structure of 30S ribosomal subunit from Thermus thermophilus. To be Published (2013)
- Release Date
- 2014-07-02
- Peptides
- ribosomal protein S2: B
ribosomal protein S3: C
ribosomal protein S4: D
ribosomal protein S5: E
ribosomal protein S6: F
ribosomal protein S7: G
ribosomal protein S8: H
ribosomal protein S9: I
ribosomal protein S10: J
ribosomal protein S11: K
ribosomal protein S12: L
ribosomal protein S13: M
ribosomal protein S14: N
ribosomal protein S15: O
ribosomal protein S16: P
ribosomal protein S17: Q
ribosomal protein S18: R
ribosomal protein S19: S
ribosomal protein S20: T
ribosomal protein THX: U - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:B
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QR
RS
ST
TU
U
SMTL ID : 4lf6.1
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
ribosomal protein S2
ribosomal protein S3
ribosomal protein S4
ribosomal protein S5
ribosomal protein S6
ribosomal protein S7
ribosomal protein S8
ribosomal protein S9
ribosomal protein S10
ribosomal protein S11
ribosomal protein S12
ribosomal protein S13
ribosomal protein S14
ribosomal protein S15
ribosomal protein S16
ribosomal protein S17
ribosomal protein S18
ribosomal protein S19
ribosomal protein S20
ribosomal protein THX
Related Entries With Identical Sequence
1emw.1 | 1fjg.1 | 1fka.1 | 1hnw.1 | 1hnx.1 | 1hnz.1 | 1hr0.1 | 1i94.1 | 1ibk.1 | 1ibl.1 | 1ibm.1 | 1j5e.1 | 1n32.1 | 1n33.1 | 1n34.1 | 1n36.1 | 1ris.1 | 1vvj.1 | 1vvj.2 | 1vy4.1 | 1vy4.2 | 1vy5.1 | 1vy5.2 | 1vy6.1 | 1vy6.2 | 1vy7.1 | 1vy7.2 | 1xmo.1 | 1xmq.1 | 1xnq.1 more...less...1xnr.1 | 2e5l.1 | 2f4v.1 | 2hhh.1 | 2kjv.1 | 2om7.1 | 2uu9.1 | 2uua.1 | 2uub.1 | 2uuc.1 | 2uxb.1 | 2uxc.1 | 2uxd.1 | 2vqe.1 | 2vqf.1 | 2zm6.1 | 3a1p.1 | 3a1p.2 | 3oto.1 | 3t1h.1 | 3t1y.1 | 4aqy.1 | 4b3m.1 | 4b3r.1 | 4b3s.1 | 4b3t.1 | 4dr1.1 | 4dr2.1 | 4dr3.1 | 4dr4.1 | 4dr5.1 | 4dr6.1 | 4dr7.1 | 4duy.1 | 4duz.1 | 4dv0.1 | 4dv1.1 | 4dv2.1 | 4dv3.1 | 4dv4.1 | 4dv5.1 | 4dv6.1 | 4dv7.1 | 4gkj.1 | 4gkk.1 | 4ji0.1 | 4ji1.1 | 4ji2.1 | 4ji3.1 | 4ji4.1 | 4ji5.1 | 4ji6.1 | 4ji7.1 | 4ji8.1 | 4jv5.1 | 4jya.1 | 4k0k.1 | 4khp.1 | 4kvb.1 | 4l47.1 | 4l47.2 | 4l71.1 | 4l71.2 | 4lel.1 | 4lel.2 | 4lf4.1 | 4lf5.1 | 4lf7.1 | 4lf8.1 | 4lf9.1 | 4lfa.1 | 4lfb.1 | 4lfc.1 | 4lfz.1 | 4lfz.2 | 4lnt.1 | 4lnt.2 | 4lsk.1 | 4lsk.2 | 4lt8.1 | 4lt8.2 | 4nxm.1 | 4nxn.1 | 4ox9.1 | 4p6f.1 | 4p6f.2 | 4p70.1 | 4p70.2 | 4tua.1 | 4tua.2 | 4tub.1 | 4tub.2 | 4tuc.1 | 4tuc.2 | 4tud.1 | 4tud.2 | 4tue.1 | 4tue.2 | 4v49.1 | 4v4a.1 | 4v4g.1 | 4v4g.2 | 4v4g.3 | 4v4g.4 | 4v4g.5 | 4v4i.1 | 4v4j.1 | 4v4p.1 | 4v4r.1 | 4v4s.1 | 4v4t.1 | 4v4x.1 | 4v4y.1 | 4v4z.1 | 4v51.1 | 4v51.2 | 4v5a.1 | 4v5a.2 | 4v5c.1 | 4v5c.2 | 4v5d.1 | 4v5d.2 | 4v5e.1 | 4v5e.2 | 4v5f.1 | 4v5f.2 | 4v5g.1 | 4v5g.2 | 4v5j.1 | 4v5j.2 | 4v5k.1 | 4v5k.2 | 4v5l.1 | 4v5m.1 | 4v5n.1 | 4v5p.1 | 4v5p.2 | 4v5q.1 | 4v5q.2 | 4v5r.1 | 4v5r.2 | 4v5s.1 | 4v5s.2 | 4v5z.4 | 4v5z.14 | 4v63.1 | 4v63.2 | 4v67.1 | 4v67.2 | 4v68.1 | 4v6a.1 | 4v6a.2 | 4v6f.1 | 4v6f.2 | 4v6g.1 | 4v6g.2 | 4v7j.1 | 4v7j.2 | 4v7k.1 | 4v7k.2 | 4v7l.1 | 4v7l.2 | 4v7m.1 | 4v7m.2 | 4v7p.1 | 4v7p.2 | 4v7w.1 | 4v7w.2 | 4v7x.1 | 4v7x.2 | 4v7y.1 | 4v7y.2 | 4v7z.1 | 4v7z.2 | 4v83.1 | 4v83.2 | 4v84.1 | 4v84.2 | 4v87.1 | 4v87.2 | 4v8a.1 | 4v8a.2 | 4v8b.1 | 4v8b.2 | 4v8c.1 | 4v8c.2 | 4v8d.1 | 4v8d.2 | 4v8e.1 | 4v8e.2 | 4v8f.1 | 4v8f.2 | 4v8g.1 | 4v8g.2 | 4v8h.1 | 4v8h.2 | 4v8i.1 | 4v8i.2 | 4v8j.1 | 4v8j.2 | 4v8n.1 | 4v8n.2 | 4v8o.1 | 4v8q.1 | 4v8u.1 | 4v8u.2 | 4v8x.1 | 4v8x.2 | 4v90.1 | 4v95.1 | 4v95.2 | 4v97.1 | 4v97.2 | 4v9a.1 | 4v9a.2 | 4v9b.1 | 4v9b.2 | 4v9h.1 | 4v9i.1 | 4v9i.2 | 4v9j.1 | 4v9j.2 | 4v9k.1 | 4v9k.2 | 4v9l.1 | 4v9l.2 | 4v9m.1 | 4v9m.2 | 4v9n.1 | 4v9n.2 | 4v9q.1 | 4v9q.2 | 4v9r.1 | 4v9r.2 | 4v9s.1 | 4v9s.2 | 4w29.1 | 4w29.2 | 4w2e.1 | 4w2f.1 | 4w2f.2 | 4w2g.1 | 4w2g.2 | 4w2h.1 | 4w2h.2 | 4w2i.1 | 4w2i.2 | 4w4g.1 | 4w4g.2 | 4wpo.1 | 4wpo.2 | 4wq1.1 | 4wq1.2 | 4wqf.1 | 4wqf.2 | 4wqr.1 | 4wqr.2 | 4wqu.1 | 4wqu.2 | 4wqy.1 | 4wqy.2 | 4wr6.1 | 4wr6.2 | 4wra.1 | 4wra.2 | 4wro.1 | 4wro.2 | 4wsd.1 | 4wsd.2 | 4wsm.1 | 4wsm.2 | 4wt1.1 | 4wt1.2 | 4wt8.1 | 4wt8.2 | 4wu1.1 | 4wu1.2 | 4wzd.1 | 4wzd.2 | 4wzo.1 | 4wzo.2 | 4x62.1 | 4x64.1 | 4x65.1 | 4x66.1 | 4xej.1 | 4xej.2 | 4y4o.1 | 4y4o.2 | 4y4p.1 | 4y4p.2 | 4yhh.1 | 4ypb.1 | 4ypb.2 | 4yy3.1 | 4yzv.1 | 4yzv.2 | 4z3s.1 | 4z3s.2 | 4z8c.1 | 4z8c.2 | 4zsn.1 | 4zsn.2 | 5a9z.1 | 5aa0.1 | 5br8.1 | 5czp.1 | 5czp.2 | 5d8b.1 | 5d8b.2 | 5dfe.1 | 5dfe.2 | 5dox.1 | 5dox.2 | 5doy.1 | 5doy.2 | 5e7k.1 | 5e7k.2 | 5e81.1 | 5e81.2 | 5el4.1 | 5el4.2 | 5el5.1 | 5el5.2 | 5el6.1 | 5el6.2 | 5el7.1 | 5el7.2 | 5hau.1 | 5hau.2 | 5hcp.1 | 5hcp.2 | 5hcq.1 | 5hcq.2 | 5hcr.1 | 5hcr.2 | 5hd1.1 | 5hd1.2 | 5ib7.1 | 5ib7.2 | 5ib8.1 | 5ib8.2 | 5ibb.1 | 5ibb.2 | 5imq.1 | 5imr.1 | 5iwa.1 | 5j30.1 | 5j30.2 | 5j3c.1 | 5j3c.2 | 5j4b.1 | 5j4b.2 | 5j4c.1 | 5j4c.2 | 5j4d.1 | 5j4d.2 | 5j8b.1 | 5lmn.1 | 5lmo.1 | 5lmp.1 | 5lmq.1 | 5lmr.1 | 5lms.1 | 5lmt.1 | 5lmu.1 | 5lmv.1 | 5ndj.1 | 5ndj.2 | 5ndk.1 | 5ndk.2 | 5ot7.1 | 5v8i.1 | 5v8i.2 | 5vp2.1 | 5vp2.2 | 5vpo.1 | 5vpo.2 | 5vpp.1 | 5vpp.2 | 5w4k.1 | 5w4k.2 | 5wis.1 | 5wis.2 | 5wit.1 | 5wit.2 | 5wnp.1 | 5wnq.1 | 5wnr.1 | 5wns.1 | 5wnt.1 | 5wnu.1 | 5wnv.1 | 5zlu.1 | 6b4v.1 | 6b4v.2 | 6boh.1 | 6boh.2 | 6bok.1 | 6bok.2 | 6buw.1 | 6buw.2 | 6bz6.1 | 6bz6.2 | 6bz7.1 | 6bz7.2 | 6bz8.1 | 6bz8.2 | 6c5l.1 | 6c5l.2 | 6cae.1 | 6cae.2 | 6cao.1 | 6cap.1 | 6caq.1 | 6car.1 | 6cas.1 | 6cfj.1 | 6cfj.2 | 6cfk.1 | 6cfk.2 | 6cfl.1 | 6cfl.2 | 6dti.1 | 6gsj.1 | 6gsj.2 | 6gsk.1 | 6gsk.2 | 6gsl.1 | 6gsl.2 | 6gzq.1 | 6gzz.63 | 6gzz.65 | 6gzz.85 | 6gzz.87 | 6mkn.1 | 6mpf.1 | 6mpi.1 | 6n1d.1 | 6n1d.2 | 6n9e.1 | 6n9e.2 | 6n9f.1 | 6n9f.2 | 6nd5.1 | 6nd5.2 | 6nd6.1 | 6nd6.2 | 6ndk.1 | 6ndk.2 | 6nsh.1 | 6nsh.2 | 6nta.1 | 6nta.2 | 6nuo.1 | 6nuo.2 | 6nwy.1 | 6nwy.2 | 6ny6.1 | 6o3m.1 | 6o3m.2 | 6o97.1 | 6o97.2 | 6of1.1 | 6of1.2 | 6of6.1 | 6of6.2 | 6oj2.1 | 6oj2.2 | 6ope.1 | 6ope.2 | 6ord.1 | 6ord.2 | 6osi.1 | 6osi.2 | 6otr.1 | 6otr.2 | 6oxa.1 | 6oxa.2 | 6oxi.1 | 6oxi.2 | 6q95.1 | 6qnq.1 | 6qnq.2 | 6qnr.1 | 6qnr.2 | 6ucq.1 | 6ucq.2 | 6uo1.1 | 6uo1.2 | 6xhv.1 | 6xhv.2 | 6xhw.1 | 6xhw.2 | 6xhx.1 | 6xhx.2 | 6xhy.1 | 6xhy.2 | 6xqd.1 | 6xqd.2 | 6xqe.1 | 6xqe.2 | 7azo.1 | 7azo.2 | 7azs.1 | 7azs.2 | 7dug.1 | 7duh.1 | 7dui.1 | 7duj.1 | 7duk.1 | 7dul.1 | 7jql.1 | 7jql.2 | 7jqm.1 | 7jqm.2 | 7lh5.1 | 7lh5.2 | 7md7.1 | 7md7.2 | 7rq8.1 | 7rq8.2 | 7rq9.1 | 7rq9.2 | 7rqa.1 | 7rqa.2 | 7rqb.1 | 7rqb.2 | 7rqc.1 | 7rqc.2 | 7rqd.1 | 7rqd.2 | 7rqe.1 | 7rqe.2 | 7u2h.1 | 7u2h.2 | 7u2i.1 | 7u2i.2 | 7u2j.1 | 7u2j.2 | 7v2l.1 | 7v2m.1 | 7v2n.1 | 7v2o.1 | 7v2p.1 | 7v2q.1 | 8cvj.1 | 8cvj.2 | 8cvk.1 | 8cvk.2 | 8cvl.1 | 8cvl.2 | 8ekb.1 | 8ekb.2 | 8ev6.1 | 8ev6.2 | 8ev7.1 | 8ev7.2 | 8fc1.1 | 8fc1.2 | 8fc2.1 | 8fc2.2 | 8fc3.1 | 8fc3.2 | 8fc4.1 | 8fc4.2 | 8fc5.1 | 8fc5.2 | 8fc6.1 | 8fc6.2 | 8fom.1 | 8fom.2 | 8fon.1 | 8fon.2 | 8g29.1 | 8g29.2 | 8g2a.1 | 8g2a.2 | 8g2b.1 | 8g2b.2 | 8g2c.1 | 8g2c.2 | 8g2d.1 | 8g2d.2 | 8t8b.30 | 8t8b.31 | 8t8b.32 | 8t8b.33 | 8t8b.34 | 8t8b.35 | 8t8b.36 | 8t8b.37 | 8t8b.38 | 8t8b.39 | 8t8b.41 | 8t8b.42 | 8t8b.43 | 8t8b.44 | 8t8b.45 | 8t8b.46 | 8t8b.47 | 8t8b.48 | 8t8b.49 | 8t8b.80 | 8t8b.81 | 8t8b.82 | 8t8b.83 | 8t8b.84 | 8t8b.85 | 8t8b.86 | 8t8b.87 | 8t8b.88 | 8t8b.89 | 8t8b.91 | 8t8b.92 | 8t8b.93 | 8t8b.94 | 8t8b.95 | 8t8b.96 | 8t8b.97 | 8t8b.98 | 8t8b.99 | 8t8c.30 | 8t8c.31 | 8t8c.32 | 8t8c.33 | 8t8c.34 | 8t8c.35 | 8t8c.36 | 8t8c.37 | 8t8c.38 | 8t8c.39 | 8t8c.41 | 8t8c.42 | 8t8c.43 | 8t8c.44 | 8t8c.45 | 8t8c.46 | 8t8c.47 | 8t8c.48 | 8t8c.49 | 8t8c.80 | 8t8c.81 | 8t8c.82 | 8t8c.83 | 8t8c.84 | 8t8c.85 | 8t8c.86 | 8t8c.87 | 8t8c.88 | 8t8c.89 | 8t8c.91 | 8t8c.92 | 8t8c.93 | 8t8c.94 | 8t8c.95 | 8t8c.96 | 8t8c.97 | 8t8c.98 | 8t8c.99 | 8ud6.1 | 8ud6.2 | 8ud7.1 | 8ud7.2 | 8ud8.1 | 8ud8.2 | 8uvr.1 | 8uvr.2 | 8uvs.1 | 8uvs.2 | 8vtu.1 | 8vtu.2 | 8vtv.1 | 8vtv.2 | 8vtw.1 | 8vtw.2 | 8vtx.1 | 8vtx.2 | 8vty.1 | 8vty.2 | 9b00.1 | 9b00.2 | 9d0j.1 | 9d0j.2 | 9d7r.1 | 9d7r.2 | 9d7s.1 | 9d7s.2 | 9d7t.1 | 9d7t.2 | 9dfc.1 | 9dfc.2 | 9dfd.1 | 9dfd.2 | 9dfe.1 | 9dfe.2