SMTL ID : 6n1d.2 (1 other biounit)

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

218 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: A.1475, G.1479, G.1480, A.1482, G.1483 No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Chain A: C.503, C.517 No protein-ligand interaction detected (PLIP) MG.3: 6 residues within 4Å: Chain A: C.338, G.339, G.340 Chain M: V.115, A.118, V.121 1 PLIP interactions: 1 interactions with chain M Metal complexes: M:V.115 MG.4: 2 residues within 4Å: Chain A: C.323, C.345 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain A: G.752, U.753 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain A: A.1090, A.1091 No protein-ligand interaction detected (PLIP) MG.7: 4 residues within 4Å: Chain A: G.746, A.747, C.792, C.793 No protein-ligand interaction detected (PLIP) MG.8: 4 residues within 4Å: Chain A: A.544, C.545, U.546, G.548 No protein-ligand interaction detected (PLIP) MG.9: 4 residues within 4Å: Chain A: C.1375, A.1376, G.1381, C.1382 No protein-ligand interaction detected (PLIP) MG.10: 5 residues within 4Å: Chain A: G.487, C.488, C.489, A.490, A.491 No protein-ligand interaction detected (PLIP) MG.11: 5 residues within 4Å: Chain A: C.112, G.115, U.116, G.117, C.228 No protein-ligand interaction detected (PLIP) MG.12: 4 residues within 4Å: Chain A: U.774, A.775, C.1490, G.1491 No protein-ligand interaction detected (PLIP) MG.13: 4 residues within 4Å: Chain 8: A.15 Chain A: A.1474, G.1480, U.1481 No protein-ligand interaction detected (PLIP) MG.14: 2 residues within 4Å: Chain A: C.1375, A.1376 No protein-ligand interaction detected (PLIP) MG.15: 3 residues within 4Å: Chain A: A.939, G.1177, U.1178 No protein-ligand interaction detected (PLIP) MG.16: 4 residues within 4Å: Chain A: G.556, G.557, G.739, C.855 No protein-ligand interaction detected (PLIP) MG.17: 3 residues within 4Å: Chain A: G.44, C.359, G.387 No protein-ligand interaction detected (PLIP) MG.18: 2 residues within 4Å: Chain A: G.755, C.787 No protein-ligand interaction detected (PLIP) MG.19: 3 residues within 4Å: Chain A: U.552, A.553, A.800 No protein-ligand interaction detected (PLIP) MG.20: 2 residues within 4Å: Chain A: A.221 Chain o: V.62 No protein-ligand interaction detected (PLIP) MG.21: 1 residues within 4Å: Chain A: G.790 No protein-ligand interaction detected (PLIP) MG.22: 1 residues within 4Å: Chain A: U.352 No protein-ligand interaction detected (PLIP) MG.23: 4 residues within 4Å: Chain A: G.1396, G.1397, U.1456, G.1457 No protein-ligand interaction detected (PLIP) MG.24: 2 residues within 4Å: Chain A: U.845, U.846 No protein-ligand interaction detected (PLIP) MG.25: 1 residues within 4Å: Chain A: C.524 No protein-ligand interaction detected (PLIP) MG.26: 2 residues within 4Å: Chain A: G.483, G.531 No protein-ligand interaction detected (PLIP) MG.27: 1 residues within 4Å: Chain A: G.977 No protein-ligand interaction detected (PLIP) MG.28: 3 residues within 4Å: Chain A: G.1431, G.1432 Chain s: K.38 No protein-ligand interaction detected (PLIP) MG.29: 2 residues within 4Å: Chain A: U.512, A.513 No protein-ligand interaction detected (PLIP) MG.30: 3 residues within 4Å: Chain A: A.1393, G.1461, G.1462 No protein-ligand interaction detected (PLIP) MG.31: 3 residues within 4Å: Chain A: A.763, C.1489, C.1490 No protein-ligand interaction detected (PLIP) MG.32: 3 residues within 4Å: Chain A: G.1334, G.1335, C.1346 No protein-ligand interaction detected (PLIP) MG.33: 4 residues within 4Å: Chain B: C.177, A.184, G.2227, U.2228 No protein-ligand interaction detected (PLIP) MG.34: 2 residues within 4Å: Chain B: A.1374, G.1375 No protein-ligand interaction detected (PLIP) MG.35: 2 residues within 4Å: Chain B: A.1684, G.1987 No protein-ligand interaction detected (PLIP) MG.36: 6 residues within 4Å: Chain B: A.2696, U.2697, A.2698, A.2699, G.2700 Chain P: S.15 No protein-ligand interaction detected (PLIP) MG.37: 5 residues within 4Å: Chain B: A.804, A.805, A.2574 Chain F: A.225, G.236 No protein-ligand interaction detected (PLIP) MG.38: 6 residues within 4Å: Chain B: A.1793, C.1794, G.1832 Chain F: H.220, V.221, R.222 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:H.220 MG.39: 3 residues within 4Å: Chain B: A.1415, A.1622, C.1623 No protein-ligand interaction detected (PLIP) MG.40: 4 residues within 4Å: Chain B: C.753, G.754, G.781, A.782 No protein-ligand interaction detected (PLIP) MG.41: 3 residues within 4Å: Chain B: G.472, G.474 Chain H: G.80 No protein-ligand interaction detected (PLIP) MG.42: 2 residues within 4Å: Chain B: G.1561, A.1562 No protein-ligand interaction detected (PLIP) MG.43: 1 residues within 4Å: Chain B: G.2223 No protein-ligand interaction detected (PLIP) MG.44: 3 residues within 4Å: Chain B: G.799, U.800, A.805 No protein-ligand interaction detected (PLIP) MG.45: 3 residues within 4Å: Chain B: A.1285, U.1287, U.2600 No protein-ligand interaction detected (PLIP) MG.46: 1 residues within 4Å: Chain B: G.602 No protein-ligand interaction detected (PLIP) MG.47: 5 residues within 4Å: Chain B: C.606, U.832, G.1270 Chain N: G.24, R.33 No protein-ligand interaction detected (PLIP) MG.48: 3 residues within 4Å: Chain B: A.2503, C.2525, A.2526 No protein-ligand interaction detected (PLIP) MG.49: 3 residues within 4Å: Chain B: G.472, C.475, A.476 No protein-ligand interaction detected (PLIP) MG.50: 4 residues within 4Å: Chain B: A.706, U.794, A.795, G.799 No protein-ligand interaction detected (PLIP) MG.51: 1 residues within 4Å: Chain B: G.790 No protein-ligand interaction detected (PLIP) MG.52: 3 residues within 4Å: Chain B: C.579, G.580, G.997 No protein-ligand interaction detected (PLIP) MG.53: 4 residues within 4Å: Chain B: C.1026, A.1029, A.1030 Chain L: K.37 No protein-ligand interaction detected (PLIP) MG.54: 2 residues within 4Å: Chain B: U.1414, C.1623 No protein-ligand interaction detected (PLIP) MG.55: 4 residues within 4Å: Chain B: G.1291, A.1292, G.1667, C.1668 No protein-ligand interaction detected (PLIP) MG.56: 4 residues within 4Å: Chain B: G.999, A.1000, A.1001, C.1002 No protein-ligand interaction detected (PLIP) MG.57: 3 residues within 4Å: Chain B: A.772, A.1633, C.1636 No protein-ligand interaction detected (PLIP) MG.58: 1 residues within 4Å: Chain B: G.830 No protein-ligand interaction detected (PLIP) MG.59: 4 residues within 4Å: Chain B: U.626, G.640, G.641 Chain H: K.98 No protein-ligand interaction detected (PLIP) MG.60: 1 residues within 4Å: Chain B: C.1584 No protein-ligand interaction detected (PLIP) MG.61: 4 residues within 4Å: Chain B: G.1319, A.1321, G.1655, C.1656 No protein-ligand interaction detected (PLIP) MG.62: 4 residues within 4Å: Chain B: G.137, C.138 Chain V: T.37, E.38 No protein-ligand interaction detected (PLIP) MG.63: 2 residues within 4Å: Chain B: C.1778, A.1790 No protein-ligand interaction detected (PLIP) MG.64: 4 residues within 4Å: Chain B: A.597, G.598, U.2012, G.2013 No protein-ligand interaction detected (PLIP) MG.65: 7 residues within 4Å: Chain B: C.1842, G.1843, G.1844, U.1845, G.1894, C.1897, G.1898 No protein-ligand interaction detected (PLIP) MG.66: 1 residues within 4Å: Chain B: G.791 No protein-ligand interaction detected (PLIP) MG.67: 1 residues within 4Å: Chain B: C.2269 No protein-ligand interaction detected (PLIP) MG.68: 3 residues within 4Å: Chain B: G.991, C.994 Chain T: K.78 No protein-ligand interaction detected (PLIP) MG.69: 3 residues within 4Å: Chain B: G.132, G.1614, A.1615 No protein-ligand interaction detected (PLIP) MG.70: 2 residues within 4Å: Chain B: G.2802 Chain P: R.8 1 PLIP interactions: 1 interactions with chain P Metal complexes: P:R.8 MG.71: 3 residues within 4Å: Chain B: C.1365, G.1366, C.1403 No protein-ligand interaction detected (PLIP) MG.72: 3 residues within 4Å: Chain B: A.1021, G.1022, G.1023 No protein-ligand interaction detected (PLIP) MG.73: 4 residues within 4Å: Chain B: G.1727, G.1760, G.1762, U.2681 No protein-ligand interaction detected (PLIP) MG.74: 4 residues within 4Å: Chain B: C.2695, A.2696, U.2697, A.2698 No protein-ligand interaction detected (PLIP) MG.75: 3 residues within 4Å: Chain B: G.2670, G.2671, C.2710 No protein-ligand interaction detected (PLIP) MG.76: 5 residues within 4Å: Chain B: G.1830, A.1895, A.1896, A.1966 Chain F: R.242 No protein-ligand interaction detected (PLIP) MG.77: 2 residues within 4Å: Chain B: A.710, G.711 No protein-ligand interaction detected (PLIP) MG.78: 5 residues within 4Å: Chain B: G.52, U.53, U.61, G.62, C.63 No protein-ligand interaction detected (PLIP) MG.79: 2 residues within 4Å: Chain B: A.1362, U.1621 No protein-ligand interaction detected (PLIP) MG.80: 1 residues within 4Å: Chain B: G.2692 No protein-ligand interaction detected (PLIP) MG.81: 3 residues within 4Å: Chain B: G.1716, G.1717, A.1718 No protein-ligand interaction detected (PLIP) MG.82: 3 residues within 4Å: Chain B: G.2326, C.2327, G.2360 No protein-ligand interaction detected (PLIP) MG.83: 4 residues within 4Å: Chain B: G.2275, U.2276, G.2326, C.2327 No protein-ligand interaction detected (PLIP) MG.84: 5 residues within 4Å: Chain B: A.2803, A.2804, G.2805 Chain G: G.110 Chain P: K.5 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:G.110 MG.85: 3 residues within 4Å: Chain B: G.1762, A.1763, A.1764 No protein-ligand interaction detected (PLIP) MG.86: 3 residues within 4Å: Chain B: G.1358, G.1359, A.1413 No protein-ligand interaction detected (PLIP) MG.87: 4 residues within 4Å: Chain B: G.1216, U.1217, A.1267, U.1269 No protein-ligand interaction detected (PLIP) MG.88: 2 residues within 4Å: Chain B: U.2815, C.2868 No protein-ligand interaction detected (PLIP) MG.89: 2 residues within 4Å: Chain B: G.1463, C.1488 No protein-ligand interaction detected (PLIP) MG.90: 3 residues within 4Å: Chain B: C.1334, C.1335, G.1352 No protein-ligand interaction detected (PLIP) MG.91: 4 residues within 4Å: Chain B: C.867, U.868, G.950, A.952 No protein-ligand interaction detected (PLIP) MG.92: 4 residues within 4Å: Chain 4: H.46 Chain B: G.2330, G.2356, G.2357 No protein-ligand interaction detected (PLIP) MG.93: 4 residues within 4Å: Chain B: G.1832, A.1967, G.1968 Chain F: R.239 No protein-ligand interaction detected (PLIP) MG.94: 2 residues within 4Å: Chain B: G.668, G.669 No protein-ligand interaction detected (PLIP) MG.95: 4 residues within 4Å: Chain B: C.718, C.719, G.1643, A.1654 No protein-ligand interaction detected (PLIP) MG.96: 4 residues within 4Å: Chain B: U.1950, U.2537, G.2538, U.2539 No protein-ligand interaction detected (PLIP) MG.97: 3 residues within 4Å: Chain B: U.1360, U.1621, A.1622 No protein-ligand interaction detected (PLIP) MG.98: 3 residues within 4Å: Chain B: C.26, C.1219, G.1259 No protein-ligand interaction detected (PLIP) MG.99: 3 residues within 4Å: Chain B: G.79, A.96, U.97 No protein-ligand interaction detected (PLIP) MG.100: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.101: 3 residues within 4Å: Chain B: A.979, C.980, C.2441 No protein-ligand interaction detected (PLIP) MG.102: 4 residues within 4Å: Chain B: C.1423, C.1424, A.1492, A.1493 No protein-ligand interaction detected (PLIP) MG.103: 1 residues within 4Å: Chain B: A.104 No protein-ligand interaction detected (PLIP) MG.104: 4 residues within 4Å: Chain B: G.1843, G.1899, A.1922, A.1923 No protein-ligand interaction detected (PLIP) MG.105: 1 residues within 4Å: Chain B: U.1958 No protein-ligand interaction detected (PLIP) MG.106: 5 residues within 4Å: Chain B: A.2046, G.2047, A.2562, G.2563, A.2599 No protein-ligand interaction detected (PLIP) MG.107: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.108: 4 residues within 4Å: Chain B: G.1446, A.1447, A.1590, A.1591 No protein-ligand interaction detected (PLIP) MG.109: 4 residues within 4Å: Chain B: C.1841, C.1842, G.1843, G.1894 No protein-ligand interaction detected (PLIP) MG.110: 3 residues within 4Å: Chain B: G.1408, G.1409, U.1416 No protein-ligand interaction detected (PLIP) MG.111: 2 residues within 4Å: Chain B: U.1217, U.1218 No protein-ligand interaction detected (PLIP) MG.112: 3 residues within 4Å: Chain B: A.1718, A.1720, U.1770 No protein-ligand interaction detected (PLIP) MG.113: 3 residues within 4Å: Chain B: A.1661, G.1662, G.1663 No protein-ligand interaction detected (PLIP) MG.114: 3 residues within 4Å: Chain B: A.1478, C.1479, G.1480 No protein-ligand interaction detected (PLIP) MG.115: 2 residues within 4Å: Chain B: A.1795, G.1796 No protein-ligand interaction detected (PLIP) MG.116: 1 residues within 4Å: Chain B: A.229 No protein-ligand interaction detected (PLIP) MG.117: 2 residues within 4Å: Chain B: U.2725, A.2726 No protein-ligand interaction detected (PLIP) MG.118: 4 residues within 4Å: Chain B: G.2498, U.2499, G.2555, C.2556 No protein-ligand interaction detected (PLIP) MG.119: 1 residues within 4Å: Chain B: G.769 No protein-ligand interaction detected (PLIP) MG.120: 2 residues within 4Å: Chain B: U.745, G.746 No protein-ligand interaction detected (PLIP) MG.121: 2 residues within 4Å: Chain B: G.1854, U.1855 No protein-ligand interaction detected (PLIP) MG.122: 4 residues within 4Å: Chain B: G.604, A.605 Chain H: P.76, V.84 No protein-ligand interaction detected (PLIP) MG.123: 4 residues within 4Å: Chain B: G.324, U.325, A.331, G.332 No protein-ligand interaction detected (PLIP) MG.124: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.125: 3 residues within 4Å: Chain B: C.758, G.759, G.780 No protein-ligand interaction detected (PLIP) MG.126: 2 residues within 4Å: Chain B: G.2723, A.2724 No protein-ligand interaction detected (PLIP) MG.127: 5 residues within 4Å: Chain 6: K.7 Chain B: U.228, A.229, G.230, G.239 No protein-ligand interaction detected (PLIP) MG.128: 1 residues within 4Å: Chain B: G.2364 No protein-ligand interaction detected (PLIP) MG.129: 5 residues within 4Å: Chain B: A.2252, A.2254, G.2255, G.2256, U.2257 No protein-ligand interaction detected (PLIP) MG.130: 3 residues within 4Å: Chain B: G.695, A.696 Chain H: Q.62 No protein-ligand interaction detected (PLIP) MG.131: 2 residues within 4Å: Chain B: C.1706, G.1707 No protein-ligand interaction detected (PLIP) MG.132: 2 residues within 4Å: Chain B: A.492, A.493 No protein-ligand interaction detected (PLIP) MG.133: 4 residues within 4Å: Chain B: G.1442, G.1443, G.1512, C.1513 No protein-ligand interaction detected (PLIP) MG.134: 2 residues within 4Å: Chain B: G.2573, A.2574 No protein-ligand interaction detected (PLIP) MG.135: 4 residues within 4Å: Chain B: U.2069, G.2224, C.2225 Chain F: P.228 No protein-ligand interaction detected (PLIP) MG.136: 2 residues within 4Å: Chain B: G.2105, U.2113 No protein-ligand interaction detected (PLIP) MG.137: 2 residues within 4Å: Chain B: A.1387, G.1388 No protein-ligand interaction detected (PLIP) MG.138: 2 residues within 4Å: Chain B: A.1872, G.1873 No protein-ligand interaction detected (PLIP) MG.139: 2 residues within 4Å: Chain B: C.2268, C.2269 No protein-ligand interaction detected (PLIP) MG.140: 5 residues within 4Å: Chain B: U.220, C.221, A.247, G.453, U.454 No protein-ligand interaction detected (PLIP) MG.141: 3 residues within 4Å: Chain B: A.1791, G.1832 Chain F: R.239 No protein-ligand interaction detected (PLIP) MG.142: 5 residues within 4Å: Chain B: G.615, U.616, C.680, G.681, C.682 No protein-ligand interaction detected (PLIP) MG.143: 4 residues within 4Å: Chain B: C.1018, C.1173 Chain S: Y.76, K.93 No protein-ligand interaction detected (PLIP) MG.144: 2 residues within 4Å: Chain B: G.2552, C.2553 No protein-ligand interaction detected (PLIP) MG.145: 3 residues within 4Å: Chain B: C.1473, G.1480, G.1482 No protein-ligand interaction detected (PLIP) MG.146: 3 residues within 4Å: Chain B: G.684, G.958, G.959 No protein-ligand interaction detected (PLIP) MG.147: 2 residues within 4Å: Chain B: G.2580, G.2582 No protein-ligand interaction detected (PLIP) MG.148: 3 residues within 4Å: Chain B: G.1647, U.1648, C.2684 No protein-ligand interaction detected (PLIP) MG.149: 2 residues within 4Å: Chain B: G.2627, G.2628 No protein-ligand interaction detected (PLIP) MG.150: 1 residues within 4Å: Chain B: U.824 No protein-ligand interaction detected (PLIP) MG.151: 3 residues within 4Å: Chain B: G.1297, A.1298 Chain P: N.23 No protein-ligand interaction detected (PLIP) MG.152: 3 residues within 4Å: Chain B: G.204, C.219, U.220 No protein-ligand interaction detected (PLIP) MG.153: 3 residues within 4Å: Chain B: G.1384, A.1385 Chain Z: S.8 1 PLIP interactions: 1 interactions with chain Z Metal complexes: Z:S.8 MG.154: 3 residues within 4Å: Chain B: A.504, G.516, G.517 No protein-ligand interaction detected (PLIP) MG.155: 4 residues within 4Å: Chain B: A.1356, G.1357 Chain V: K.64, R.73 No protein-ligand interaction detected (PLIP) MG.156: 3 residues within 4Å: Chain B: G.2837, G.2845, C.2846 No protein-ligand interaction detected (PLIP) MG.157: 2 residues within 4Å: Chain B: G.1796, C.1797 No protein-ligand interaction detected (PLIP) MG.158: 2 residues within 4Å: Chain B: G.806, C.807 No protein-ligand interaction detected (PLIP) MG.159: 3 residues within 4Å: Chain B: C.1769, G.1982, C.1983 No protein-ligand interaction detected (PLIP) MG.160: 3 residues within 4Å: Chain B: A.213, A.214, U.215 No protein-ligand interaction detected (PLIP) MG.161: 3 residues within 4Å: Chain B: G.31, C.473, C.475 No protein-ligand interaction detected (PLIP) MG.162: 3 residues within 4Å: Chain B: C.248, C.249, A.452 No protein-ligand interaction detected (PLIP) MG.163: 3 residues within 4Å: Chain B: A.1213 Chain N: K.17, V.19 No protein-ligand interaction detected (PLIP) MG.164: 2 residues within 4Å: Chain B: U.540, G.541 No protein-ligand interaction detected (PLIP) MG.165: 4 residues within 4Å: Chain B: G.1456, C.1497, A.1498, G.1536 No protein-ligand interaction detected (PLIP) MG.166: 2 residues within 4Å: Chain C: G.101, G.103 No protein-ligand interaction detected (PLIP) MG.167: 3 residues within 4Å: Chain C: C.6, G.115, G.116 No protein-ligand interaction detected (PLIP) MG.168: 2 residues within 4Å: Chain C: G.86, G.87 No protein-ligand interaction detected (PLIP) MG.169: 2 residues within 4Å: Chain C: G.81, G.82 No protein-ligand interaction detected (PLIP) MG.170: 2 residues within 4Å: Chain C: G.82, G.83 No protein-ligand interaction detected (PLIP) MG.171: 3 residues within 4Å: Chain B: U.1918 Chain D: G.24, G.25 No protein-ligand interaction detected (PLIP) MG.172: 5 residues within 4Å: Chain E: A.45, L.209, R.210, V.212, P.226 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:P.226 MG.173: 3 residues within 4Å: Chain E: K.18, V.19, P.226 No protein-ligand interaction detected (PLIP) MG.174: 3 residues within 4Å: Chain F: S.179, G.180, A.272 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:G.180 MG.175: 5 residues within 4Å: Chain B: G.1520, C.1521 Chain F: Y.97, G.100, E.101 No protein-ligand interaction detected (PLIP) MG.176: 4 residues within 4Å: Chain F: E.146, K.150, E.188, Y.190 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:E.188 MG.177: 5 residues within 4Å: Chain F: F.53, R.54, G.55, R.217, R.218 No protein-ligand interaction detected (PLIP) MG.178: 2 residues within 4Å: Chain F: K.31, L.33 No protein-ligand interaction detected (PLIP) MG.179: 5 residues within 4Å: Chain B: C.2045, A.2046 Chain G: H.137, P.138, G.139 No protein-ligand interaction detected (PLIP) MG.180: 5 residues within 4Å: Chain H: K.58, W.60, P.61, Q.62, H.70 No protein-ligand interaction detected (PLIP) MG.181: 4 residues within 4Å: Chain N: F.51, R.55, T.57, T.58 No protein-ligand interaction detected (PLIP) MG.182: 3 residues within 4Å: Chain N: R.79, Q.81, G.109 1 PLIP interactions: 1 interactions with chain N Metal complexes: N:G.109 MG.183: 6 residues within 4Å: Chain B: G.826, G.852, G.853 Chain N: S.40, R.41, L.45 2 PLIP interactions: 2 interactions with chain N Metal complexes: N:S.40, N:S.40 MG.184: 7 residues within 4Å: Chain B: A.891 Chain O: R.6, K.8, F.69, P.70, D.71, Y.93 No protein-ligand interaction detected (PLIP) MG.185: 1 residues within 4Å: Chain O: R.6 No protein-ligand interaction detected (PLIP) MG.186: 7 residues within 4Å: Chain O: T.75, K.76, K.77, G.86, K.87, G.88, V.90 1 PLIP interactions: 1 interactions with chain O Metal complexes: O:K.76 MG.187: 6 residues within 4Å: Chain Q: R.22, L.23, R.24, I.39, D.40, D.41 1 PLIP interactions: 1 interactions with chain Q Metal complexes: Q:D.41 MG.188: 1 residues within 4Å: Chain Q: R.19 No protein-ligand interaction detected (PLIP) MG.189: 4 residues within 4Å: Chain Q: L.53, K.56, L.57, K.58 1 PLIP interactions: 1 interactions with chain Q Metal complexes: Q:L.57 MG.190: 5 residues within 4Å: Chain G: V.9 Chain R: R.3, G.4, A.5, I.7 1 PLIP interactions: 1 interactions with chain R Metal complexes: R:G.4 MG.191: 3 residues within 4Å: Chain R: R.16, S.80, I.83 No protein-ligand interaction detected (PLIP) MG.192: 3 residues within 4Å: Chain L: H.38 Chain S: A.67, R.70 No protein-ligand interaction detected (PLIP) MG.193: 5 residues within 4Å: Chain T: V.33, E.34, V.57, V.58, A.59 2 PLIP interactions: 2 interactions with chain T Metal complexes: T:V.33, T:V.57 MG.194: 5 residues within 4Å: Chain B: G.769, C.770, A.771 Chain U: P.87, R.88 1 PLIP interactions: 1 interactions with chain U Metal complexes: U:R.88 MG.195: 4 residues within 4Å: Chain B: C.1618, C.1619 Chain V: T.56, K.77 No protein-ligand interaction detected (PLIP) MG.196: 5 residues within 4Å: Chain W: C.76, A.78, K.81, I.96, C.99 1 PLIP interactions: 1 interactions with chain W Metal complexes: W:C.99 MG.197: 4 residues within 4Å: Chain B: G.79 Chain W: K.9, G.10, V.27 1 PLIP interactions: 1 interactions with chain W Metal complexes: W:K.9 MG.198: 2 residues within 4Å: Chain O: R.134 Chain X: R.122 No protein-ligand interaction detected (PLIP) MG.199: 5 residues within 4Å: Chain B: U.2074, G.2075 Chain Z: T.35, G.36, I.37 No protein-ligand interaction detected (PLIP) MG.200: 1 residues within 4Å: Chain Z: L.95 No protein-ligand interaction detected (PLIP) MG.201: 4 residues within 4Å: Chain 0: A.58, R.59, L.61, T.62 1 PLIP interactions: 1 interactions with chain 0 Metal complexes: 0:L.61 MG.202: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.203: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.204: 4 residues within 4Å: Chain 0: L.21, L.60, L.61, T.62 1 PLIP interactions: 1 interactions with chain 0 Metal complexes: 0:T.62 MG.205: 2 residues within 4Å: Chain 0: V.6, Q.56 No protein-ligand interaction detected (PLIP) MG.206: 3 residues within 4Å: Chain 1: R.29 Chain B: G.951, G.1202 No protein-ligand interaction detected (PLIP) MG.207: 5 residues within 4Å: Chain 2: I.5, H.6 Chain C: U.40, C.43, G.44 1 PLIP interactions: 1 interactions with chain 2 Metal complexes: 2:H.6 MG.208: 3 residues within 4Å: Chain 3: G.53, R.54, K.55 2 PLIP interactions: 2 interactions with chain 3 Metal complexes: 3:G.53, 3:R.54 MG.209: 2 residues within 4Å: Chain 4: E.15, R.18 2 PLIP interactions: 2 interactions with chain 4 Metal complexes: 4:E.15, 4:E.15 MG.210: 2 residues within 4Å: Chain 4: R.19, N.20 No protein-ligand interaction detected (PLIP) MG.211: 5 residues within 4Å: Chain 4: K.27, R.28, N.29, T.30 Chain B: C.2270 1 PLIP interactions: 1 interactions with chain 4 Metal complexes: 4:K.27 MG.212: 3 residues within 4Å: Chain 5: M.1 Chain B: A.773, C.774 No protein-ligand interaction detected (PLIP) MG.213: 5 residues within 4Å: Chain 5: G.26, K.29, V.30, R.33 Chain B: G.703 1 PLIP interactions: 1 interactions with chain 5 Metal complexes: 5:G.26 MG.214: 3 residues within 4Å: Chain 6: R.29 Chain B: A.2378, C.2379 No protein-ligand interaction detected (PLIP) MG.215: 5 residues within 4Å: Chain 7: C.11, C.14, C.27, N.29, H.32 4 PLIP interactions: 4 interactions with chain 7 Metal complexes: 7:C.11, 7:C.14, 7:C.27, 7:H.32 MG.217: 5 residues within 4Å: Chain A: U.368, G.369 Chain o: R.5, L.6, A.7 1 PLIP interactions: 1 interactions with chain o Metal complexes: o:L.6 MG.218: 4 residues within 4Å: Chain p: D.12, V.18, E.48, Y.50 No protein-ligand interaction detected (PLIP) MG.219: 3 residues within 4Å: Chain A: G.1291, U.1292 Chain t: Y.20 1 PLIP interactions: 1 interactions with chain t Metal complexes: t:Y.20

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.216: 9 residues within 4Å: Chain c: C.8, C.11, K.17, L.18, L.20, K.21, C.25, C.30, A.31 5 PLIP interactions: 5 interactions with chain c, Metal complexes: c:C.8, c:C.11, c:L.18, c:C.25, c:C.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, J. et al., Spontaneous ribosomal translocation of mRNA and tRNAs into a chimeric hybrid state. Proc. Natl. Acad. Sci. U.S.A. (2019)

Release Date

2019-04-03

Peptides

50S ribosomal protein L1: E
50S ribosomal protein L2: F
50S ribosomal protein L3: G
50S ribosomal protein L4: H
50S ribosomal protein L5: I
50S ribosomal protein L6: J
50S ribosomal protein L9: K
50S ribosomal protein L13: L
50S ribosomal protein L14: M
50S ribosomal protein L15: N
50S ribosomal protein L16: O
50S ribosomal protein L17: P
50S ribosomal protein L18: Q
50S ribosomal protein L19: R
50S ribosomal protein L20: S
50S ribosomal protein L21: T
50S ribosomal protein L22: U
50S ribosomal protein L23: V
50S ribosomal protein L24: W
50S ribosomal protein L25: X
50S ribosomal protein L27: Y
50S ribosomal protein L28: Z
50S ribosomal protein L29: 0
50S ribosomal protein L30: 1
50S ribosomal protein L31: 2
50S ribosomal protein L32: 3
50S ribosomal protein L33: 4
50S ribosomal protein L34: 5
50S ribosomal protein L35: 6
50S ribosomal protein L36: 7
30S ribosomal protein S2: a
30S ribosomal protein S3: b
30S ribosomal protein S4: c
30S ribosomal protein S5: d
30S ribosomal protein S6: e
30S ribosomal protein S7: f
30S ribosomal protein S8: g
30S ribosomal protein S9: h
30S ribosomal protein S10: i
30S ribosomal protein S11: j
30S ribosomal protein S12: k
30S ribosomal protein S13: l
30S ribosomal protein S14 type Z: m
30S ribosomal protein S15: n
30S ribosomal protein S16: o
30S ribosomal protein S17: p
30S ribosomal protein S18: q
30S ribosomal protein S19: r
30S ribosomal protein S20: s
30S ribosomal protein Thx: t

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

E
BL01

F
BL02

G
BL03

H
BL04

I
BL05

J
BL06

K
BL09

L
BL13

M
BL14

N
BL15

O
BL16

P
BL17

Q
BL18

R
BL19

S
BL20

T
BL21

U
BL22

V
BL23

W
BL24

X
BL25

Y
BL27

Z
BL28

0
BL29

1
BL30

2
BL31

3
BL32

4
BL33

5
BL34

6
BL35

7
BL36

a
BS02

b
BS03

c
BS04

d
BS05

e
BS06

f
BS07

g
BS08

h
BS09

i
BS10

j
BS11

k
BS12

l
BS13

m
BS14

n
BS15

o
BS16

p
BS17

q
BS18

r
BS19

s
BS20

t
BTHX

50S ribosomal protein L1

50S ribosomal protein L2

50S ribosomal protein L3

50S ribosomal protein L4

50S ribosomal protein L5

50S ribosomal protein L6

50S ribosomal protein L9

50S ribosomal protein L13

50S ribosomal protein L14

50S ribosomal protein L15

50S ribosomal protein L16

50S ribosomal protein L17

50S ribosomal protein L18

50S ribosomal protein L19

50S ribosomal protein L20

50S ribosomal protein L21

50S ribosomal protein L22

50S ribosomal protein L23

50S ribosomal protein L24

50S ribosomal protein L25

50S ribosomal protein L27

50S ribosomal protein L28

50S ribosomal protein L29

50S ribosomal protein L30

50S ribosomal protein L31

50S ribosomal protein L32

50S ribosomal protein L33

50S ribosomal protein L34

50S ribosomal protein L35

50S ribosomal protein L36

30S ribosomal protein S2

30S ribosomal protein S3

30S ribosomal protein S4

30S ribosomal protein S5

30S ribosomal protein S6

30S ribosomal protein S7

30S ribosomal protein S8

30S ribosomal protein S9

30S ribosomal protein S10

30S ribosomal protein S11

30S ribosomal protein S12

30S ribosomal protein S13

30S ribosomal protein S14 type Z

30S ribosomal protein S15

30S ribosomal protein S16

30S ribosomal protein S17

30S ribosomal protein S18

30S ribosomal protein S19

30S ribosomal protein S20

30S ribosomal protein Thx

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