- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.50 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 1 x U- U- U- U- U- U: RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')(Non-covalent)
- 300 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 1 x EUS: N-[(1R,2S,3S,4R,5S)-5-amino-4-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-3-hydroxycyclohexyl]methanesulfonamide(Non-functional Binders)
- 2 x ZN: ZINC ION(Non-covalent)
ZN.282: 5 residues within 4Å:- Chain D: C.8, C.11, L.18, C.25, C.30
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.8, D:C.11, D:C.25, D:C.30
ZN.297: 4 residues within 4Å:- Chain N: C.23, C.26, C.39, C.42
4 PLIP interactions:4 interactions with chain N- Metal complexes: N:C.23, N:C.26, N:C.39, N:C.42
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- O'Sullivan, M.E. et al., Aminoglycoside ribosome interactions reveal novel conformational states at ambient temperature. Nucleic Acids Res. (2018)
- Release Date
- 2018-07-25
- Peptides
- 30S ribosomal protein S2: B
30S ribosomal protein S3: C
30S ribosomal protein S4: D
30S ribosomal protein S5: E
30S ribosomal protein S6: F
30S ribosomal protein S7: G
30S ribosomal protein S8: H
30S ribosomal protein S9: I
30S ribosomal protein S10: J
30S ribosomal protein S11: K
30S ribosomal protein S12: L
30S ribosomal protein S13: M
30S ribosomal protein S14 type Z: N
30S ribosomal protein S15: O
30S ribosomal protein S16: P
30S ribosomal protein S17: Q
30S ribosomal protein S18: R
30S ribosomal protein S19: S
30S ribosomal protein S20: T
30S ribosomal protein Thx: U - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:B
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QR
RS
ST
TU
U
SMTL ID : 6cas.1
Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS
30S ribosomal protein S2
30S ribosomal protein S3
30S ribosomal protein S4
30S ribosomal protein S5
30S ribosomal protein S6
30S ribosomal protein S7
30S ribosomal protein S8
30S ribosomal protein S9
30S ribosomal protein S10
30S ribosomal protein S11
30S ribosomal protein S12
30S ribosomal protein S13
30S ribosomal protein S14 type Z
30S ribosomal protein S15
30S ribosomal protein S16
30S ribosomal protein S17
30S ribosomal protein S18
30S ribosomal protein S19
30S ribosomal protein S20
30S ribosomal protein Thx
Related Entries With Identical Sequence
1ab3.1 | 1emw.1 | 1fjg.1 | 1fka.1 | 1hnw.1 | 1hnx.1 | 1hnz.1 | 1hr0.1 | 1i94.1 | 1ibk.1 | 1ibl.1 | 1ibm.1 | 1j5e.1 | 1n32.1 | 1n33.1 | 1n34.1 | 1n36.1 | 1qkf.1 | 1qkh.1 | 1ris.1 | 1vvj.1 | 1vvj.2 | 1vy4.1 | 1vy4.2 | 1vy5.1 | 1vy5.2 | 1vy6.1 | 1vy6.2 | 1vy7.1 | 1vy7.2 more...less...1xmo.1 | 1xmq.1 | 1xnq.1 | 1xnr.1 | 2e5l.1 | 2f4v.1 | 2fkx.1 | 2hhh.1 | 2kjv.1 | 2uu9.1 | 2uua.1 | 2uub.1 | 2uuc.1 | 2uxb.1 | 2uxc.1 | 2uxd.1 | 2vqe.1 | 2vqf.1 | 2zm6.1 | 3oto.1 | 3t1h.1 | 3t1y.1 | 4aqy.1 | 4b3m.1 | 4b3r.1 | 4b3s.1 | 4b3t.1 | 4dr1.1 | 4dr2.1 | 4dr3.1 | 4dr4.1 | 4dr5.1 | 4dr6.1 | 4dr7.1 | 4duy.1 | 4duz.1 | 4dv0.1 | 4dv1.1 | 4dv2.1 | 4dv3.1 | 4dv4.1 | 4dv5.1 | 4dv6.1 | 4dv7.1 | 4gkj.1 | 4gkk.1 | 4ji0.1 | 4ji1.1 | 4ji2.1 | 4ji3.1 | 4ji4.1 | 4ji5.1 | 4ji6.1 | 4ji7.1 | 4ji8.1 | 4jv5.1 | 4jya.1 | 4k0k.1 | 4khp.1 | 4kvb.1 | 4l47.1 | 4l47.2 | 4l71.1 | 4l71.2 | 4lel.1 | 4lel.2 | 4lf4.1 | 4lf5.1 | 4lf6.1 | 4lf7.1 | 4lf8.1 | 4lf9.1 | 4lfa.1 | 4lfb.1 | 4lfc.1 | 4lfz.1 | 4lfz.2 | 4lnt.1 | 4lnt.2 | 4lsk.1 | 4lsk.2 | 4lt8.1 | 4lt8.2 | 4nxm.1 | 4nxn.1 | 4ox9.1 | 4p6f.1 | 4p6f.2 | 4p70.1 | 4p70.2 | 4tua.1 | 4tua.2 | 4tub.1 | 4tub.2 | 4tuc.1 | 4tuc.2 | 4tud.1 | 4tud.2 | 4tue.1 | 4tue.2 | 4v49.1 | 4v4a.1 | 4v4g.1 | 4v4g.2 | 4v4g.3 | 4v4g.4 | 4v4g.5 | 4v4i.1 | 4v4j.1 | 4v4p.1 | 4v4r.1 | 4v4s.1 | 4v4t.1 | 4v4x.1 | 4v4y.1 | 4v4z.1 | 4v51.1 | 4v51.2 | 4v5a.1 | 4v5a.2 | 4v5c.1 | 4v5c.2 | 4v5d.1 | 4v5d.2 | 4v5e.1 | 4v5e.2 | 4v5f.1 | 4v5f.2 | 4v5g.1 | 4v5g.2 | 4v5j.1 | 4v5j.2 | 4v5k.1 | 4v5k.2 | 4v5l.1 | 4v5m.1 | 4v5n.1 | 4v5p.1 | 4v5p.2 | 4v5q.1 | 4v5q.2 | 4v5r.1 | 4v5r.2 | 4v5s.1 | 4v5s.2 | 4v63.1 | 4v63.2 | 4v67.1 | 4v67.2 | 4v68.1 | 4v6a.1 | 4v6a.2 | 4v6f.1 | 4v6f.2 | 4v6g.1 | 4v6g.2 | 4v7j.1 | 4v7j.2 | 4v7k.1 | 4v7k.2 | 4v7l.1 | 4v7l.2 | 4v7m.1 | 4v7m.2 | 4v7p.1 | 4v7p.2 | 4v7w.1 | 4v7w.2 | 4v7x.1 | 4v7x.2 | 4v7y.1 | 4v7y.2 | 4v7z.1 | 4v7z.2 | 4v83.1 | 4v83.2 | 4v84.1 | 4v84.2 | 4v87.1 | 4v87.2 | 4v8a.1 | 4v8a.2 | 4v8b.1 | 4v8b.2 | 4v8c.1 | 4v8c.2 | 4v8d.1 | 4v8d.2 | 4v8e.1 | 4v8e.2 | 4v8f.1 | 4v8f.2 | 4v8g.1 | 4v8g.2 | 4v8h.1 | 4v8h.2 | 4v8i.1 | 4v8i.2 | 4v8j.1 | 4v8j.2 | 4v8n.1 | 4v8n.2 | 4v8o.1 | 4v8q.1 | 4v8u.1 | 4v8u.2 | 4v8x.1 | 4v8x.2 | 4v90.1 | 4v95.1 | 4v95.2 | 4v97.1 | 4v97.2 | 4v9a.1 | 4v9a.2 | 4v9b.1 | 4v9b.2 | 4v9h.1 | 4v9i.1 | 4v9i.2 | 4v9j.1 | 4v9j.2 | 4v9k.1 | 4v9k.2 | 4v9l.1 | 4v9l.2 | 4v9m.1 | 4v9m.2 | 4v9n.1 | 4v9n.2 | 4v9q.1 | 4v9q.2 | 4v9r.1 | 4v9r.2 | 4v9s.1 | 4v9s.2 | 4w29.1 | 4w29.2 | 4w2e.1 | 4w2f.1 | 4w2f.2 | 4w2g.1 | 4w2g.2 | 4w2h.1 | 4w2h.2 | 4w2i.1 | 4w2i.2 | 4w4g.1 | 4w4g.2 | 4wpo.1 | 4wpo.2 | 4wq1.1 | 4wq1.2 | 4wqf.1 | 4wqf.2 | 4wqr.1 | 4wqr.2 | 4wqu.1 | 4wqu.2 | 4wqy.1 | 4wqy.2 | 4wr6.1 | 4wr6.2 | 4wra.1 | 4wra.2 | 4wro.1 | 4wsd.1 | 4wsd.2 | 4wsm.1 | 4wsm.2 | 4wt1.1 | 4wt1.2 | 4wt8.1 | 4wt8.2 | 4wu1.1 | 4wu1.2 | 4wzd.1 | 4wzd.2 | 4wzo.1 | 4wzo.2 | 4x62.1 | 4x64.1 | 4x65.1 | 4x66.1 | 4xej.1 | 4xej.2 | 4y4o.1 | 4y4o.2 | 4y4p.1 | 4y4p.2 | 4yhh.1 | 4ypb.1 | 4ypb.2 | 4yy3.1 | 4yzv.1 | 4yzv.2 | 4z3s.1 | 4z3s.2 | 4z8c.1 | 4z8c.2 | 4zer.1 | 4zer.2 | 4zsn.1 | 4zsn.2 | 5a9z.1 | 5aa0.1 | 5br8.1 | 5czp.1 | 5czp.2 | 5d8b.1 | 5d8b.2 | 5dfe.1 | 5dfe.2 | 5dox.1 | 5dox.2 | 5doy.1 | 5doy.2 | 5e7k.1 | 5e7k.2 | 5e81.1 | 5e81.2 | 5el4.1 | 5el4.2 | 5el5.1 | 5el5.2 | 5el6.1 | 5el6.2 | 5el7.1 | 5el7.2 | 5f8k.1 | 5f8k.2 | 5fdu.1 | 5fdu.2 | 5fdv.1 | 5fdv.2 | 5hau.1 | 5hau.2 | 5hcp.1 | 5hcp.2 | 5hcq.1 | 5hcq.2 | 5hcr.1 | 5hcr.2 | 5hd1.1 | 5hd1.2 | 5ib7.1 | 5ib7.2 | 5ib8.1 | 5ib8.2 | 5ibb.1 | 5ibb.2 | 5imq.1 | 5imr.1 | 5iwa.1 | 5j30.1 | 5j30.2 | 5j3c.1 | 5j3c.2 | 5j4b.1 | 5j4b.2 | 5j4c.1 | 5j4c.2 | 5j4d.1 | 5j4d.2 | 5j8b.1 | 5lmn.1 | 5lmo.1 | 5lmp.1 | 5lmq.1 | 5lmr.1 | 5lms.1 | 5lmt.1 | 5lmu.1 | 5lmv.1 | 5ndj.1 | 5ndj.2 | 5ndk.1 | 5ndk.2 | 5ot7.1 | 5uq7.1 | 5uq8.1 | 5v8i.1 | 5v8i.2 | 5vp2.1 | 5vp2.2 | 5vpo.1 | 5vpo.2 | 5vpp.1 | 5vpp.2 | 5w4k.1 | 5w4k.2 | 5wis.1 | 5wis.2 | 5wit.1 | 5wit.2 | 5wnp.1 | 5wnq.1 | 5wnr.1 | 5wns.1 | 5wnt.1 | 5wnu.1 | 5wnv.1 | 5zlu.1 | 6b4v.1 | 6b4v.2 | 6boh.1 | 6boh.2 | 6bok.1 | 6bok.2 | 6buw.1 | 6buw.2 | 6bz6.1 | 6bz6.2 | 6bz7.1 | 6bz7.2 | 6bz8.1 | 6bz8.2 | 6c5l.1 | 6c5l.2 | 6cae.1 | 6cae.2 | 6cao.1 | 6cap.1 | 6caq.1 | 6car.1 | 6cfj.1 | 6cfj.2 | 6cfk.1 | 6cfk.2 | 6cfl.1 | 6cfl.2 | 6czr.1 | 6czr.2 | 6dti.1 | 6fkr.1 | 6fkr.2 | 6gsj.1 | 6gsj.2 | 6gsk.1 | 6gsk.2 | 6gsl.1 | 6gsl.2 | 6gzq.1 | 6gzz.61 | 6gzz.63 | 6gzz.64 | 6gzz.65 | 6gzz.66 | 6gzz.71 | 6gzz.72 | 6gzz.83 | 6gzz.85 | 6gzz.86 | 6gzz.87 | 6gzz.88 | 6gzz.93 | 6gzz.94 | 6mkn.1 | 6mpf.1 | 6mpi.1 | 6n1d.1 | 6n1d.2 | 6n9e.1 | 6n9e.2 | 6n9f.1 | 6n9f.2 | 6nd5.1 | 6nd5.2 | 6nd6.1 | 6nd6.2 | 6ndk.1 | 6ndk.2 | 6nsh.1 | 6nsh.2 | 6nta.1 | 6nta.2 | 6nuo.1 | 6nuo.2 | 6nwy.1 | 6nwy.2 | 6ny6.1 | 6o3m.1 | 6o3m.2 | 6o97.1 | 6o97.2 | 6of1.1 | 6of1.2 | 6of6.1 | 6of6.2 | 6oj2.1 | 6oj2.2 | 6ope.1 | 6ope.2 | 6ord.1 | 6ord.2 | 6osi.1 | 6osi.2 | 6otr.1 | 6otr.2 | 6oxa.1 | 6oxa.2 | 6oxi.1 | 6oxi.2 | 6q95.1 | 6qnq.1 | 6qnq.2 | 6qnr.1 | 6qnr.2 | 6ucq.1 | 6ucq.2 | 6uo1.1 | 6uo1.2 | 6xhv.1 | 6xhv.2 | 6xhw.1 | 6xhw.2 | 6xhx.1 | 6xhx.2 | 6xhy.1 | 6xhy.2 | 6xqd.1 | 6xqd.2 | 6xqe.1 | 6xqe.2 | 7azo.1 | 7azo.2 | 7azs.1 | 7azs.2 | 7dug.1 | 7duh.1 | 7dui.1 | 7duj.1 | 7duk.1 | 7dul.1 | 7jql.1 | 7jql.2 | 7jqm.1 | 7jqm.2 | 7lh5.1 | 7lh5.2 | 7md7.1 | 7md7.2 | 7rq8.1 | 7rq8.2 | 7rq9.1 | 7rq9.2 | 7rqa.1 | 7rqa.2 | 7rqb.1 | 7rqb.2 | 7rqc.1 | 7rqc.2 | 7rqd.1 | 7rqd.2 | 7rqe.1 | 7rqe.2 | 7u2h.1 | 7u2h.2 | 7u2i.1 | 7u2i.2 | 7u2j.1 | 7u2j.2 | 7v2l.1 | 7v2m.1 | 7v2n.1 | 7v2o.1 | 7v2p.1 | 7v2q.1 | 8cvj.1 | 8cvj.2 | 8cvk.1 | 8cvk.2 | 8cvl.1 | 8cvl.2 | 8ekb.1 | 8ekb.2 | 8ev6.1 | 8ev6.2 | 8ev7.1 | 8ev7.2 | 8fc1.1 | 8fc1.2 | 8fc2.1 | 8fc2.2 | 8fc3.1 | 8fc3.2 | 8fc4.1 | 8fc4.2 | 8fc5.1 | 8fc5.2 | 8fc6.1 | 8fc6.2 | 8fom.1 | 8fom.2 | 8fon.1 | 8fon.2 | 8g29.1 | 8g29.2 | 8g2a.1 | 8g2a.2 | 8g2b.1 | 8g2b.2 | 8g2c.1 | 8g2c.2 | 8g2d.1 | 8g2d.2 | 8t8b.34 | 8t8b.36 | 8t8b.44 | 8t8b.84 | 8t8b.86 | 8t8b.94 | 8t8c.34 | 8t8c.36 | 8t8c.44 | 8t8c.84 | 8t8c.86 | 8t8c.94 | 8ud6.1 | 8ud6.2 | 8ud7.1 | 8ud7.2 | 8ud8.1 | 8ud8.2 | 8uvr.1 | 8uvr.2 | 8uvs.1 | 8uvs.2 | 8vtu.1 | 8vtu.2 | 8vtv.1 | 8vtv.2 | 8vtw.1 | 8vtw.2 | 8vtx.1 | 8vtx.2 | 8vty.1 | 8vty.2 | 9b00.1 | 9b00.2 | 9d0j.1 | 9d0j.2 | 9d7r.1 | 9d7r.2 |