SMTL ID : 4y16.1

Crystal structure of the mCD1d/NC-aGC/iNKTCR ternary complex

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.60 Å
Oligo State
hetero-1-1-1-1-mer
Ligands
1 x 48G: N-[(2S,3S,4R)-3,4-dihydroxy-1-{[6-O-(naphthalen-1-ylcarbamoyl)-alpha-D-galactopyranosyl]oxy}octadecan-2-yl]hexacosanamide(Non-covalent)
5 x NAG: N-ACETYL-D-GLUCOSAMINE(Post Translational Modification)(Non-functional Binders)(Non-covalent)
1 x FUL: BETA-L-FUCOSE(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Birkholz, A. et al., Lipid and Carbohydrate Modifications of alpha-Galactosylceramide Differently Influence Mouse and Human Type I Natural Killer T Cell Activation. J.Biol.Chem. (2015)
Release Date
2015-06-03
Peptides
Antigen-presenting glycoprotein CD1d1: A
Beta-2-microglobulin: B
Chimeric TCR Valpha14/Jalpha18 chain (mouse variable domain, human constant domain): C
Chimeric TCR Vbeta8.2 chain (mouse variable domain, human constant domain): D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D

Antigen-presenting glycoprotein CD1d1

Beta-2-microglobulin

Chimeric TCR Valpha14/Jalpha18 chain (mouse variable domain, human constant domain)

Chimeric TCR Vbeta8.2 chain (mouse variable domain, human constant domain)

Related Entries With Identical Sequence

1p4l.1 | 1u58.1 | 1z5l.1 | 1z5l.2 | 1z5l.3 | 2akr.1 | 2akr.2 | 2akr.3 | 2akr.4 | 2fik.1 | 2gaz.1 | 2q7y.1 | 2q7y.2 | 3arb.1 | 3ard.1 | 3are.1 | 3arf.1 | 3arg.1 | 3au1.1 | 3c8k.1 | 3g08.1 | 3gml.1 | 3gmm.1 | 3gmn.1 | 3gmo.1 | 3gmp.1 | 3gmq.1 | 3gmr.1 | 3he6.1 | 3he7.1  more...