SMTL ID : 4y4k.1

Crystal structure of the mCD1d/EF77/iNKTCR ternary complex

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.90 Å
Oligo State
hetero-1-1-1-1-mer
Ligands
1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x 49Y: (4Z)-9-[(1R,2R)-2-decylcyclopropyl]-N-[(2S,3S,4S)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]non-4-enamide(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Birkholz, A. et al., Structural modifications of alphaGalCer in both lipid and carbohydrate moiety influence activation of murine and human iNKT cells. To Be Published
Release Date
2015-05-27
Peptides
Antigen-presenting glycoprotein CD1d1: A
Beta-2-microglobulin: B
chimeric TCR Valpha14Jalpha18 chain (mouse variable, human constant domain): C
chimeric TCR Vbeta8.2 chain (mouse variable, human constant domain): D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D

Antigen-presenting glycoprotein CD1d1

Beta-2-microglobulin

chimeric TCR Valpha14Jalpha18 chain (mouse variable, human constant domain)

chimeric TCR Vbeta8.2 chain (mouse variable, human constant domain)

Related Entries With Identical Sequence

1p4l.1 | 1u58.1 | 1z5l.1 | 1z5l.2 | 1z5l.3 | 2akr.1 | 2akr.2 | 2akr.3 | 2akr.4 | 2fik.1 | 2gaz.1 | 2q7y.1 | 2q7y.2 | 3arb.1 | 3ard.1 | 3are.1 | 3arf.1 | 3arg.1 | 3au1.1 | 3c8k.1 | 3g08.1 | 3gml.1 | 3gmm.1 | 3gmn.1 | 3gmo.1 | 3gmp.1 | 3gmq.1 | 3gmr.1 | 3he6.1 | 3he7.1  more...