SMTL ID : 4yt1.1

Human PPAR Gamma Ligand Binding Domain in complex with a Gammma Selective Synthetic Partial Agonist MEKT76

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x JJB: N-(benzylsulfonyl)-4-propoxy-3-({[4-(pyrimidin-2-yl)benzoyl]amino}methyl)benzamide(Non-covalent)

JJB.1: 19 residues within 4Å: Chain B: H.76, R.90, I.91, G.94, C.95, R.98, S.99, E.101, A.102, E.105, I.136, Y.137, M.139, L.140, L.143, I.151, S.152, F.173, M.174 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:H.76, B:R.98, B:A.102, B:I.136, B:Y.137, B:L.140, B:L.140, B:I.151, B:F.173 Hydrogen bonds: B:H.76, B:S.152 pi-Stacking: B:H.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ohashi, M. et al., Peroxisome proliferator-activated receptor gamma (PPAR gamma ) has multiple binding points that accommodate ligands in various conformations: Structurally similar PPAR gamma partial agonists bind to PPAR gamma LBD in different conformations. Bioorg.Med.Chem.Lett. (2015)

Release Date

2016-03-02

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

Related Entries With Identical Sequence