- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.19 Å
- Oligo State
- homo-60-mer
- Ligands
- 306 x NO3: NITRATE ION(Non-functional Binders)
- 27 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 9 residues within 4Å:- Chain A: T.82, L.84, T.85, P.86, S.92, R.119, A.120, C.147
- Chain B: Y.91
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:T.82, A:L.84, A:S.92, A:C.147
MG.32: 9 residues within 4Å:- Chain F: T.82, P.86, S.92, A.113, N.115, I.116, T.118, R.119
- Chain G: Y.91
2 PLIP interactions:2 interactions with chain F- Metal complexes: F:S.92, F:T.118
MG.35: 9 residues within 4Å:- Chain G: P.86, Y.91, S.92, A.113, N.115, I.116, T.118, R.119
- Chain H: Y.91
3 PLIP interactions:3 interactions with chain G- Metal complexes: G:S.92, G:I.116, G:T.118
MG.38: 8 residues within 4Å:- Chain H: T.82, L.84, T.85, P.86, S.92, R.119, C.147
- Chain I: Y.91
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:T.82, H:L.84, H:S.92, H:C.147
MG.56: 9 residues within 4Å:- Chain K: T.82, L.84, T.85, P.86, S.92, R.119, A.120, C.147
- Chain L: Y.91
2 PLIP interactions:2 interactions with chain K- Metal complexes: K:T.82, K:L.84
MG.70: 10 residues within 4Å:- Chain M: T.82, L.84, T.85, P.86, S.92, T.118, R.119, A.120, C.147
- Chain N: Y.91
4 PLIP interactions:3 interactions with chain M, 1 interactions with chain N- Metal complexes: M:T.82, M:L.84, M:S.92, N:Y.91
MG.88: 8 residues within 4Å:- Chain K: Y.91
- Chain O: T.82, L.84, T.85, P.86, S.92, R.119, C.147
4 PLIP interactions:4 interactions with chain O- Metal complexes: O:T.82, O:L.84, O:S.92, O:C.147
MG.104: 8 residues within 4Å:- Chain R: T.82, L.84, T.85, P.86, S.92, R.119, C.147
- Chain S: Y.91
4 PLIP interactions:4 interactions with chain R- Metal complexes: R:T.82, R:L.84, R:S.92, R:C.147
MG.109: 10 residues within 4Å:- Chain S: T.82, L.84, T.85, P.86, S.92, T.118, R.119, A.120, C.147
- Chain T: Y.91
3 PLIP interactions:1 interactions with chain T, 2 interactions with chain S- Metal complexes: T:Y.91, S:T.82, S:S.92
MG.114: 9 residues within 4Å:- Chain U: T.82, L.84, T.85, P.86, S.92, R.119, A.120, C.147
- Chain V: Y.91
4 PLIP interactions:4 interactions with chain U- Metal complexes: U:T.82, U:L.84, U:S.92, U:C.147
MG.143: 9 residues within 4Å:- Chain 0: Y.91
- Chain Z: T.82, P.86, S.92, A.113, N.115, I.116, T.118, R.119
2 PLIP interactions:2 interactions with chain Z- Metal complexes: Z:S.92, Z:T.118
MG.146: 9 residues within 4Å:- Chain 0: P.86, Y.91, S.92, A.113, N.115, I.116, T.118, R.119
- Chain 1: Y.91
3 PLIP interactions:3 interactions with chain 0- Metal complexes: 0:S.92, 0:I.116, 0:T.118
MG.149: 8 residues within 4Å:- Chain 1: T.82, L.84, T.85, P.86, S.92, R.119, C.147
- Chain 2: Y.91
4 PLIP interactions:4 interactions with chain 1- Metal complexes: 1:T.82, 1:L.84, 1:S.92, 1:C.147
MG.167: 9 residues within 4Å:- Chain 4: T.82, L.84, T.85, P.86, S.92, R.119, A.120, C.147
- Chain 5: Y.91
2 PLIP interactions:2 interactions with chain 4- Metal complexes: 4:T.82, 4:L.84
MG.181: 10 residues within 4Å:- Chain 6: T.82, L.84, T.85, P.86, S.92, T.118, R.119, A.120, C.147
- Chain 7: Y.91
4 PLIP interactions:3 interactions with chain 6, 1 interactions with chain 7- Metal complexes: 6:T.82, 6:L.84, 6:S.92, 7:Y.91
MG.199: 8 residues within 4Å:- Chain 4: Y.91
- Chain 8: T.82, L.84, T.85, P.86, S.92, R.119, C.147
4 PLIP interactions:4 interactions with chain 8- Metal complexes: 8:T.82, 8:L.84, 8:S.92, 8:C.147
MG.215: 8 residues within 4Å:- Chain b: T.82, L.84, T.85, P.86, S.92, R.119, C.147
- Chain c: Y.91
4 PLIP interactions:4 interactions with chain b- Metal complexes: b:T.82, b:L.84, b:S.92, b:C.147
MG.220: 10 residues within 4Å:- Chain c: T.82, L.84, T.85, P.86, S.92, T.118, R.119, A.120, C.147
- Chain d: Y.91
3 PLIP interactions:2 interactions with chain c, 1 interactions with chain d- Metal complexes: c:T.82, c:S.92, d:Y.91
MG.225: 9 residues within 4Å:- Chain e: T.82, L.84, T.85, P.86, S.92, R.119, A.120, C.147
- Chain f: Y.91
4 PLIP interactions:4 interactions with chain e- Metal complexes: e:T.82, e:L.84, e:S.92, e:C.147
MG.254: 9 residues within 4Å:- Chain j: T.82, P.86, S.92, A.113, N.115, I.116, T.118, R.119
- Chain k: Y.91
2 PLIP interactions:2 interactions with chain j- Metal complexes: j:S.92, j:T.118
MG.257: 9 residues within 4Å:- Chain k: P.86, Y.91, S.92, A.113, N.115, I.116, T.118, R.119
- Chain l: Y.91
3 PLIP interactions:3 interactions with chain k- Metal complexes: k:S.92, k:I.116, k:T.118
MG.260: 8 residues within 4Å:- Chain l: T.82, L.84, T.85, P.86, S.92, R.119, C.147
- Chain m: Y.91
4 PLIP interactions:4 interactions with chain l- Metal complexes: l:T.82, l:L.84, l:S.92, l:C.147
MG.278: 9 residues within 4Å:- Chain o: T.82, L.84, T.85, P.86, S.92, R.119, A.120, C.147
- Chain p: Y.91
2 PLIP interactions:2 interactions with chain o- Metal complexes: o:T.82, o:L.84
MG.292: 10 residues within 4Å:- Chain q: T.82, L.84, T.85, P.86, S.92, T.118, R.119, A.120, C.147
- Chain r: Y.91
4 PLIP interactions:1 interactions with chain r, 3 interactions with chain q- Metal complexes: r:Y.91, q:T.82, q:L.84, q:S.92
MG.310: 8 residues within 4Å:- Chain o: Y.91
- Chain s: T.82, L.84, T.85, P.86, S.92, R.119, C.147
4 PLIP interactions:4 interactions with chain s- Metal complexes: s:T.82, s:L.84, s:S.92, s:C.147
MG.326: 8 residues within 4Å:- Chain v: T.82, L.84, T.85, P.86, S.92, R.119, C.147
- Chain w: Y.91
4 PLIP interactions:4 interactions with chain v- Metal complexes: v:T.82, v:L.84, v:S.92, v:C.147
MG.331: 10 residues within 4Å:- Chain w: T.82, L.84, T.85, P.86, S.92, T.118, R.119, A.120, C.147
- Chain x: Y.91
3 PLIP interactions:2 interactions with chain w, 1 interactions with chain x- Metal complexes: w:T.82, w:S.92, x:Y.91
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McPherson, A., Structures of additional crystal forms of Satellite tobacco mosaic virus grown from a variety of salts. Acta Crystallogr.,Sect.F (2021)
- Release Date
- 2021-12-15
- Peptides
- Coat protein: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijklmnopqrstuvwx
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
GGQ
HHR
IIS
JJT
KKU
AV
BW
CX
DY
EZ
F0
G1
H2
I3
J4
K5
L6
M7
N8
O9
GGa
HHb
IIc
JJd
KKe
Af
Bg
Ch
Di
Ej
Fk
Gl
Hm
In
Jo
Kp
Lq
Mr
Ns
Ot
GGu
HHv
IIw
JJx
KK
SMTL ID : 5bkq.1
Crystallographic structure of a cubic form of STMV grown from nitrate
Coat protein
Toggle Identical (AMNU67eqr) Toggle Identical (BCDLVWX5fghp) Toggle Identical (EOY8is) Toggle Identical (FQSTZacdjuwx) Toggle Identical (G0k) Toggle Identical (HP19lt) Toggle Identical (I2m) Toggle Identical (J3n) Toggle Identical (K4o) Toggle Identical (Rbv)Related Entries With Identical Sequence
1a34.1 | 1a34.2 | 1a34.3 | 1a34.4 | 1a34.5 | 4nia.1 | 4oq8.1 | 4oq8.2 | 4oq8.3 | 4oq8.4 | 4oq8.5 | 4oq9.1 | 4oq9.2 | 4oq9.3 | 5bkl.1 | 5bkn.1 | 7m2t.1 | 7m2t.2 | 7m2t.3 | 7m2t.4 | 7m2t.5 | 7m2t.6 | 7m2t.7 | 7m2t.8 | 7m2t.9 | 7m2t.10 | 7m2t.11 | 7m2t.12 | 7m2t.13 | 7m2t.14 more...less...7m2t.15 | 7m2t.16 | 7m2t.17 | 7m2t.18 | 7m2t.19 | 7m2t.20 | 7m2t.21 | 7m2t.22 | 7m2t.23 | 7m2t.24 | 7m2t.25 | 7m2t.26 | 7m2t.27 | 7m2t.28 | 7m2t.29 | 7m2t.30 | 7m2v.1 | 7m3r.1 | 7m3t.1 | 7m50.1 | 7m54.1 | 7m57.1 | 7m57.2 | 7m57.3 | 7m57.4 | 7m57.5 | 7m57.6 | 7m57.7 | 7m57.8 | 7m57.9 | 7m57.10 | 7m57.11 | 7m57.12 | 7m57.13 | 7m57.14 | 7m57.15 | 7m57.16 | 7m57.17 | 7m57.18 | 7m57.19 | 7m57.20 | 7m57.21 | 7m57.22 | 7m57.23 | 7m57.24 | 7m57.25 | 7m57.26 | 7m57.27 | 7m57.28 | 7m57.29 | 7m57.30