- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- monomer
- Ligands
- 1 x TYR- PRO- LYS- ARG- ILE- ALA: RCC1(Non-covalent)
- 1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
SAH.2: 20 residues within 4Å:- Chain A: W.38, M.48, G.87, A.88, G.89, R.92, I.93, D.109, I.110, T.111, F.114, C.135, G.136, L.137, Q.138, Q.153, W.154, V.155, H.158, L.159
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:G.87, A:I.110, A:T.111, A:T.111, A:T.111, A:L.137, A:Q.138
- Water bridges: A:Q.153
- Salt bridges: A:R.92
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 10 residues within 4Å:- Chain A: W.154, V.155, I.156, G.157, D.185, N.186, D.198, S.200
- Ligands: TYR-PRO-LYS-ARG-ILE-ALA.1, TYR-PRO-LYS-ARG-ILE-ALA.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:V.155, A:G.157, A:D.198
- Water bridges: A:W.154
GOL.4: 2 residues within 4Å:- Chain A: H.54, I.55
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.54
GOL.5: 2 residues within 4Å:- Chain A: E.104, R.130
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.104, A:R.130
- 37 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
UNX.6: 2 residues within 4Å:- Chain A: H.234, Y.236
Ligand excluded by PLIPUNX.7: 4 residues within 4Å:- Chain A: E.27, T.160, Q.162, H.163
Ligand excluded by PLIPUNX.8: 4 residues within 4Å:- Chain A: Y.37, I.41, G.47, G.50
Ligand excluded by PLIPUNX.9: 3 residues within 4Å:- Chain A: K.65, Q.68, R.69
Ligand excluded by PLIPUNX.10: 4 residues within 4Å:- Chain A: F.70, N.76, T.78, N.178
Ligand excluded by PLIPUNX.11: 2 residues within 4Å:- Chain A: K.95, E.125
Ligand excluded by PLIPUNX.12: 1 residues within 4Å:- Chain A: G.50
Ligand excluded by PLIPUNX.13: 2 residues within 4Å:- Chain A: R.210, I.211
Ligand excluded by PLIPUNX.14: 2 residues within 4Å:- Chain A: C.213, L.217
Ligand excluded by PLIPUNX.15: 3 residues within 4Å:- Chain A: R.210, C.213, S.214
Ligand excluded by PLIPUNX.16: 2 residues within 4Å:- Chain A: E.223, R.224
Ligand excluded by PLIPUNX.17: 2 residues within 4Å:- Chain A: N.61, S.62
Ligand excluded by PLIPUNX.18: 2 residues within 4Å:- Chain A: P.229, D.230
Ligand excluded by PLIPUNX.19: 3 residues within 4Å:- Chain A: A.188, Q.189, Y.233
Ligand excluded by PLIPUNX.20: 4 residues within 4Å:- Chain A: V.45, R.96, Y.121
- Ligands: UNX.40
Ligand excluded by PLIPUNX.21: 2 residues within 4Å:- Chain A: E.166, R.170
Ligand excluded by PLIPUNX.22: 4 residues within 4Å:- Chain A: N.186, M.187, R.203, V.208
Ligand excluded by PLIPUNX.23: 3 residues within 4Å:- Chain A: N.178, G.179, R.241
Ligand excluded by PLIPUNX.24: 4 residues within 4Å:- Chain A: K.39, T.111, E.112, D.113
Ligand excluded by PLIPUNX.25: 6 residues within 4Å:- Chain A: D.106, R.130, N.131, E.143, S.146, Y.147
Ligand excluded by PLIPUNX.26: 3 residues within 4Å:- Chain A: T.141, P.142, R.170
Ligand excluded by PLIPUNX.27: 3 residues within 4Å:- Chain A: E.73, G.74, K.77
Ligand excluded by PLIPUNX.28: 1 residues within 4Å:- Chain A: N.61
Ligand excluded by PLIPUNX.29: 3 residues within 4Å:- Chain A: T.44, V.45, D.46
Ligand excluded by PLIPUNX.30: 3 residues within 4Å:- Chain A: S.32, K.33, T.36
Ligand excluded by PLIPUNX.31: 2 residues within 4Å:- Chain A: R.72, E.73
Ligand excluded by PLIPUNX.32: 2 residues within 4Å:- Chain A: S.81, E.104
Ligand excluded by PLIPUNX.33: 1 residues within 4Å:- Chain A: D.145
Ligand excluded by PLIPUNX.34: 1 residues within 4Å:- Chain A: C.134
Ligand excluded by PLIPUNX.35: 2 residues within 4Å:- Chain A: A.221, E.222
Ligand excluded by PLIPUNX.36: 2 residues within 4Å:- Chain A: L.194, D.196
Ligand excluded by PLIPUNX.37: 1 residues within 4Å:- Chain A: N.178
Ligand excluded by PLIPUNX.38: 1 residues within 4Å:- Chain A: P.177
Ligand excluded by PLIPUNX.39: 3 residues within 4Å:- Chain A: D.26, E.27, K.28
Ligand excluded by PLIPUNX.40: 3 residues within 4Å:- Chain A: V.45, Y.121
- Ligands: UNX.20
Ligand excluded by PLIPUNX.41: 3 residues within 4Å:- Chain A: G.79, T.80, S.81
Ligand excluded by PLIPUNX.42: 3 residues within 4Å:- Chain A: L.101, F.102, R.103
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dong, C. et al., Structural basis for substrate recognition by the human N-terminal methyltransferase 1. Genes Dev. (2015)
- Release Date
- 2015-10-28
- Peptides
- N-terminal Xaa-Pro-Lys N-methyltransferase 1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- monomer
- Ligands
- 1 x TYR- PRO- LYS- ARG- ILE- ALA: RCC1(Non-covalent)
- 1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 37 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dong, C. et al., Structural basis for substrate recognition by the human N-terminal methyltransferase 1. Genes Dev. (2015)
- Release Date
- 2015-10-28
- Peptides
- N-terminal Xaa-Pro-Lys N-methyltransferase 1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A