- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- monomer
- Ligands
- 1 x 5JP- PRO- LYS- ARG- ILE- ALA: RCC1(Non-covalent)
- 1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
SAH.2: 21 residues within 4Å:- Chain A: W.38, M.48, G.87, A.88, G.89, R.92, I.93, D.109, I.110, T.111, F.114, C.135, G.136, L.137, Q.138, Q.153, W.154, V.155, H.158, L.159
- Ligands: 5JP-PRO-LYS-ARG-ILE-ALA.1
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:G.87, A:I.110, A:T.111, A:T.111, A:T.111, A:L.137, A:Q.138
- Water bridges: A:Q.153
- Salt bridges: A:R.92
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 10 residues within 4Å:- Chain A: W.154, V.155, I.156, G.157, D.185, N.186, S.200, V.201
- Ligands: 5JP-PRO-LYS-ARG-ILE-ALA.1, 5JP-PRO-LYS-ARG-ILE-ALA.1
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:V.155, A:G.157, A:N.186, A:V.201
- Water bridges: A:N.186, A:N.186, A:S.200
GOL.4: 5 residues within 4Å:- Chain A: Y.37, D.195, V.197, D.198
- Ligands: 5JP-PRO-LYS-ARG-ILE-ALA.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.195
- Water bridges: A:G.50, A:D.198
GOL.5: 2 residues within 4Å:- Chain A: E.104, R.130
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.104, A:R.130
- 22 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
UNX.6: 2 residues within 4Å:- Chain A: E.27
- Ligands: UNX.12
Ligand excluded by PLIPUNX.7: 3 residues within 4Å:- Chain A: L.101, F.102, R.103
Ligand excluded by PLIPUNX.8: 2 residues within 4Å:- Chain A: K.172
- Ligands: UNX.13
Ligand excluded by PLIPUNX.9: 1 residues within 4Å:- Chain A: Y.121
Ligand excluded by PLIPUNX.10: 2 residues within 4Å:- Chain A: S.19, S.21
Ligand excluded by PLIPUNX.11: 2 residues within 4Å:- Chain A: V.45, Y.121
Ligand excluded by PLIPUNX.12: 3 residues within 4Å:- Chain A: E.27, H.163
- Ligands: UNX.6
Ligand excluded by PLIPUNX.13: 3 residues within 4Å:- Chain A: R.169, K.172
- Ligands: UNX.8
Ligand excluded by PLIPUNX.14: 3 residues within 4Å:- Chain A: H.234, Y.236
- Ligands: UNX.22
Ligand excluded by PLIPUNX.15: 4 residues within 4Å:- Chain A: T.20, T.160, D.161, Q.162
Ligand excluded by PLIPUNX.16: 1 residues within 4Å:- Chain A: D.46
Ligand excluded by PLIPUNX.17: 3 residues within 4Å:- Chain A: A.188, Q.189, Y.233
Ligand excluded by PLIPUNX.18: 3 residues within 4Å:- Chain A: K.65, Q.68, R.69
Ligand excluded by PLIPUNX.19: 1 residues within 4Å:- Chain A: K.119
Ligand excluded by PLIPUNX.20: 2 residues within 4Å:- Chain A: Q.138, D.139
Ligand excluded by PLIPUNX.21: 1 residues within 4Å:- Chain A: I.58
Ligand excluded by PLIPUNX.22: 4 residues within 4Å:- Chain A: A.188, L.205, Y.236
- Ligands: UNX.14
Ligand excluded by PLIPUNX.23: 2 residues within 4Å:- Chain A: P.42, G.47
Ligand excluded by PLIPUNX.24: 2 residues within 4Å:- Chain A: R.170
- Ligands: UNX.25
Ligand excluded by PLIPUNX.25: 4 residues within 4Å:- Chain A: Q.138, D.139, R.170
- Ligands: UNX.24
Ligand excluded by PLIPUNX.26: 3 residues within 4Å:- Chain A: E.143, D.145, S.146
Ligand excluded by PLIPUNX.27: 1 residues within 4Å:- Chain A: R.69
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dong, C. et al., Structural basis for substrate recognition by the human N-terminal methyltransferase 1. Genes Dev. (2015)
- Release Date
- 2015-10-28
- Peptides
- N-terminal Xaa-Pro-Lys N-methyltransferase 1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- monomer
- Ligands
- 1 x 5JP- PRO- LYS- ARG- ILE- ALA: RCC1(Non-covalent)
- 1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 22 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dong, C. et al., Structural basis for substrate recognition by the human N-terminal methyltransferase 1. Genes Dev. (2015)
- Release Date
- 2015-10-28
- Peptides
- N-terminal Xaa-Pro-Lys N-methyltransferase 1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A