SMTL ID : 7u1m.1 (1 other biounit)

Crystal structure of NTMT1 in complex with compound YD206

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.17 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 20 residues within 4Å: Chain A: W.38, M.48, C.86, G.87, A.88, G.89, R.92, I.93, D.109, I.110, T.111, F.114, G.136, L.137, Q.138, Q.153, W.154, V.155, H.158, L.159 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:A.88, A:A.88, A:I.93, A:I.110, A:T.111, A:T.111, A:L.137, A:Q.138, A:Q.138, A:Q.153 Salt bridges: A:R.92

1 x KYF: (1R,3S,4R)-1-azabicyclo[2.2.2]octan-3-yl {2-[2-(4-fluorophenyl)-1,3-thiazol-4-yl]propan-2-yl}carbamate(Non-covalent)

KYF.2: 13 residues within 4Å: Chain A: L.49, Y.52, W.154, G.157, H.158, D.185, N.186, D.195, V.197, D.198, S.200, I.232, Y.233 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.154, A:I.232 Hydrogen bonds: A:N.186 Salt bridges: A:D.195, A:D.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, G. et al., Venglustat Inhibits Protein N-Terminal Methyltransferase 1 in a Substrate-Competitive Manner. J.Med.Chem. (2022)

Release Date

2022-12-14

Peptides

N-terminal Xaa-Pro-Lys N-methyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-terminal Xaa-Pro-Lys N-methyltransferase 1

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