SMTL ID : 7ss1.2 (1 other biounit)

The structure of NTMT1 in complex with compound GD433

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 20 residues within 4Å: Chain A: W.38, M.48, G.87, A.88, G.89, R.92, I.93, D.109, I.110, T.111, F.114, C.135, G.136, L.137, Q.138, Q.153, W.154, V.155, H.158, L.159 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:A.88, A:I.93, A:I.110, A:T.111, A:T.111, A:L.137, A:Q.138, A:Q.138, A:Q.153 Salt bridges: A:R.92

1 x AKF: (1R,3S,4R)-1-azabicyclo[2.2.2]octan-3-yl {2-[2-(4-fluoro-3-hydroxyphenyl)-1,3-thiazol-4-yl]propan-2-yl}carbamate(Non-covalent)

AKF.2: 14 residues within 4Å: Chain A: L.49, G.50, W.154, V.155, I.156, G.157, H.158, D.185, N.186, D.195, D.198, S.200, I.232, Y.233 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.154 Hydrogen bonds: A:G.157, A:D.185, A:N.186, A:Y.233 Salt bridges: A:D.195, A:D.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yadav, R. et al., Discovery of a first-in-class small molecule inhibitor for Protein N-terminal methyltransferases 1/2. To Be Published

Release Date

2022-11-16

Peptides

N-terminal Xaa-Pro-Lys N-methyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

N-terminal Xaa-Pro-Lys N-methyltransferase 1

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