SMTL ID : 7k3d.1 (1 other biounit)

The structure of NTMT1 in complex with compound DC1-13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain A: W.38, M.48, G.87, G.89, R.92, I.93, D.109, I.110, T.111, F.114, G.136, L.137, Q.138, Q.153, W.154, V.155, H.158, L.159 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:I.110, A:T.111, A:T.111, A:T.111, A:L.137, A:Q.138, A:Q.153 Salt bridges: A:R.92

1 x VWP: N~2~-{(2S)-1-[(naphthalen-1-yl)acetyl]-2,5-dihydro-1H-pyrrole-2-carbonyl}-L-lysyl-L-argininamide(Non-covalent)

VWP.2: 15 residues within 4Å: Chain A: W.38, M.48, L.49, G.50, Y.52, I.55, W.154, H.158, N.186, D.195, D.198, S.200, E.231, I.232, Y.233 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.38, A:W.38, A:L.49, A:Y.52, A:Y.52, A:I.55, A:W.154, A:Y.233 Hydrogen bonds: A:N.186, A:E.231, A:Y.233 Water bridges: A:N.186, A:E.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, D. et al., Structure-based Discovery of Cell-Potent Peptidomimetic Inhibitors for Protein N-Terminal Methyltransferase 1. Acs Med.Chem.Lett. (2021)

Release Date

2021-04-14

Peptides

N-terminal Xaa-Pro-Lys N-methyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

N-terminal Xaa-Pro-Lys N-methyltransferase 1

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