SMTL ID : 5ehp.1 (1 other biounit)

Non-receptor Protein Tyrosine Phosphatase SHP2 in Complex with Allosteric Inhibitor SHP836

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x 5OA: 5-[2,3-bis(chloranyl)phenyl]-2-[(3~{R},5~{S})-3,5-dimethylpiperazin-1-yl]pyrimidin-4-amine(Non-covalent)

5OA.1: 14 residues within 4Å: Chain A: E.111, R.112, F.114, H.115, T.219, T.220, E.250, E.251, T.254, L.255, Q.258, P.492, K.493, Q.496 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.220, A:E.250, A:P.492, A:P.492, A:K.493 Hydrogen bonds: A:F.114, A:E.251 Water bridges: A:R.112 pi-Cation interactions: A:R.112 Halogen bonds: A:T.254

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: Y.63, K.71, Y.280, K.365, K.367 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.63, A:Y.63 Salt bridges: A:K.71, A:K.365, A:K.367 PO4.3: 4 residues within 4Å: Chain A: E.196, K.199, Q.258, K.261 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.196, A:Q.258, A:Q.258 Water bridges: A:K.199, A:K.199, A:Q.257, A:Q.257 Salt bridges: A:K.199, A:K.261 PO4.4: 3 residues within 4Å: Chain A: N.218, R.221, K.493 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.218 Water bridges: A:R.112, A:R.221 Salt bridges: A:R.221, A:K.493 PO4.5: 5 residues within 4Å: Chain A: R.33, S.35, K.36, S.37, T.43 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.36, A:S.37 Salt bridges: A:R.33 PO4.6: 6 residues within 4Å: Chain A: R.139, S.141, S.143, H.144, V.149, M.172 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.143 Salt bridges: A:R.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia Fortanet, J. et al., Allosteric Inhibition of SHP2: Identification of a Potent, Selective, and Orally Efficacious Phosphatase Inhibitor. J.Med.Chem. (2016)

Release Date

2016-07-06

Peptides

Tyrosine-protein phosphatase non-receptor type 11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein phosphatase non-receptor type 11

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