SMTL ID : 5ehr.1 (1 other biounit)

Non-receptor Protein Tyrosine Phosphatase SHP2 in Complex with Allosteric Inhibitor SHP099

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x 5OD: 6-(4-azanyl-4-methyl-piperidin-1-yl)-3-[2,3-bis(chloranyl)phenyl]pyrazin-2-amine(Non-covalent)

5OD.1: 15 residues within 4Å: Chain A: T.109, E.111, R.112, F.114, H.115, T.219, T.220, E.250, E.251, T.254, L.255, Q.258, P.492, K.493, Q.496 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:E.250, A:P.492 Hydrogen bonds: A:F.114, A:E.251 Water bridges: A:R.112 pi-Cation interactions: A:R.112 Halogen bonds: A:T.254

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: E.196, K.199, Q.258, K.261 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:E.196, A:Q.258, A:Q.258, A:Q.258 Water bridges: A:K.199, A:K.199, A:Q.257, A:Q.257 Salt bridges: A:K.199, A:K.261 PO4.3: 5 residues within 4Å: Chain A: R.33, S.35, K.36, S.37, T.43 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.36, A:S.37 Water bridges: A:G.14, A:G.14, A:R.33 Salt bridges: A:R.33 PO4.4: 3 residues within 4Å: Chain A: R.139, E.140, S.141 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y.P. et al., Allosteric inhibition of SHP2 phosphatase inhibits cancers driven by receptor tyrosine kinases. Nature (2016)

Release Date

2016-06-29

Peptides

Tyrosine-protein phosphatase non-receptor type 11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein phosphatase non-receptor type 11

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