SMTL ID : 6mdc.2 (1 other biounit)

Non-receptor Protein Tyrosine Phosphatase SHP2 in Complex with Allosteric Inhibitor Pyrazolo-pyrimidinone 1 SHP389

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

monomer

Ligands

1 x JEA: 6-[(3S,4S)-4-amino-3-methyl-2-oxa-8-azaspiro[4.5]decan-8-yl]-3-[3-chloro-2-(cyclopropylamino)pyridin-4-yl]-5-methyl-2,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one(Non-covalent)

JEA.1: 17 residues within 4Å: Chain A: T.109, E.111, R.112, F.114, H.115, L.217, T.219, T.220, E.250, E.251, T.254, L.255, Q.258, D.490, P.492, K.493, Q.496 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.254, A:Q.258, A:K.493 Hydrogen bonds: A:T.109, A:R.112, A:T.254 Water bridges: A:T.219 pi-Cation interactions: A:R.112 Halogen bonds: A:T.220, A:D.490

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: R.33, S.35, K.36, S.37, T.43 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.36, A:S.37, A:S.37, A:S.37 Water bridges: A:R.33, A:N.38 Salt bridges: A:R.33 PO4.3: 4 residues within 4Å: Chain A: G.120, R.139, S.141, S.143 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.120, A:S.143 Salt bridges: A:R.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagdanoff, J.T. et al., Optimization of Fused Bicyclic Allosteric SHP2 Inhibitors. J. Med. Chem. (2019)

Release Date

2019-02-13

Peptides

Tyrosine-protein phosphatase non-receptor type 11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Tyrosine-protein phosphatase non-receptor type 11

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