SMTL ID : 6mdb.2 (1 other biounit)

Non-receptor Protein Tyrosine Phosphatase SHP2 in Complex with Allosteric Inhibitor Pyrazolo-pyrimidinone 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

monomer

Ligands

1 x JE4: 6-(4-amino-4-methylpiperidin-1-yl)-3-(2,3-dichlorophenyl)-5-methyl-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one(Non-covalent)

JE4.1: 15 residues within 4Å: Chain A: E.111, R.112, F.114, H.115, L.217, T.219, T.220, E.250, E.251, T.254, L.255, Q.258, P.492, K.493, Q.496 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.220, A:E.250, A:P.492, A:P.492, A:K.493 Hydrogen bonds: A:R.112, A:E.250, A:E.251 pi-Cation interactions: A:R.112 Halogen bonds: A:T.254

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: R.33, S.35, K.36, S.37, T.43 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.36, A:S.37, A:S.37, A:S.37 Water bridges: A:R.33 Salt bridges: A:R.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sarver, P. et al., 6-Amino-3-methylpyrimidinones as Potent, Selective, and Orally Efficacious SHP2 Inhibitors. J. Med. Chem. (2019)

Release Date

2019-02-13

Peptides

Tyrosine-protein phosphatase non-receptor type 11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Tyrosine-protein phosphatase non-receptor type 11

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