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SMTL ID : 8t6g.2
(1 other biounit)
Identification of GDC-1971 (RLY-1971), a SHP2 inhibitor designed for the treatment of solid tumors
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.84 Å
Oligo State
monomer
Ligands
7 x
SO4
:
SULFATE ION
(Non-functional Binders)
SO4.1:
4 residues within 4Å:
Chain A:
R.112
,
K.199
,
Q.258
,
K.261
13
PLIP interactions
:
13 interactions with chain A
Hydrogen bonds:
A:Q.258
Water bridges:
A:E.111
,
A:R.112
,
A:R.112
,
A:R.112
,
A:K.199
,
A:K.199
,
A:K.199
,
A:K.199
,
A:K.199
Salt bridges:
A:R.112
,
A:K.199
,
A:K.261
SO4.2:
4 residues within 4Å:
Chain A:
R.139
,
S.141
,
Q.142
,
S.143
5
PLIP interactions
:
5 interactions with chain A
Hydrogen bonds:
A:Q.142
,
A:Q.142
,
A:S.143
,
A:S.143
Salt bridges:
A:R.139
SO4.3:
6 residues within 4Å:
Chain A:
R.33
,
S.35
,
K.36
,
S.37
,
T.43
,
K.56
5
PLIP interactions
:
5 interactions with chain A
Hydrogen bonds:
A:S.35
,
A:K.36
,
A:S.37
Salt bridges:
A:R.33
,
A:K.56
SO4.4:
2 residues within 4Å:
Chain A:
R.387
,
K.403
1
PLIP interactions
:
1 interactions with chain A
Salt bridges:
A:R.387
SO4.5:
3 residues within 4Å:
Chain A:
K.132
,
N.218
,
R.221
5
PLIP interactions
:
5 interactions with chain A
Hydrogen bonds:
A:N.218
,
A:N.218
Water bridges:
A:P.216
Salt bridges:
A:K.132
,
A:R.221
SO4.6:
3 residues within 4Å:
Chain A:
K.71
,
Y.280
Ligands:
SO4.7
2
PLIP interactions
:
2 interactions with chain A
Water bridges:
A:K.281
Salt bridges:
A:K.71
SO4.7:
7 residues within 4Å:
Chain A:
Y.63
,
K.71
,
Y.280
,
K.365
,
S.366
,
K.367
Ligands:
SO4.6
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:Y.63
Salt bridges:
A:K.71
,
A:K.367
1 x
YT2
:
(1S)-1-{6-[(1S)-1-amino-1,3-dihydrospiro[indene-2,4'-piperidin]-1'-yl]-3-(3,4-dihydro-1,5-naphthyridin-1(2H)-yl)-1H-pyrazolo[3,4-b]pyrazin-5-yl}ethan-1-ol
(Non-covalent)
YT2.8:
22 residues within 4Å:
Chain A:
T.109
,
S.110
,
E.111
,
R.112
,
F.114
,
H.115
,
G.116
,
P.216
,
L.217
,
N.218
,
T.219
,
T.220
,
Q.246
,
E.250
,
E.251
,
T.254
,
L.255
,
Q.258
,
D.490
,
P.492
,
K.493
,
Q.496
13
PLIP interactions
:
13 interactions with chain A
Hydrophobic interactions:
A:E.250
,
A:E.250
,
A:Q.258
,
A:K.493
,
A:Q.496
Hydrogen bonds:
A:T.109
,
A:L.217
,
A:T.219
,
A:T.220
,
A:E.251
,
A:T.254
Water bridges:
A:R.112
,
A:R.112
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Taylor, A.M. et al., Identification of GDC-1971 (RLY-1971), a SHP2 Inhibitor Designed for the Treatment of Solid Tumors. J.Med.Chem. (2023)
Release Date
2023-10-11
Peptides
Tyrosine-protein phosphatase non-receptor type 11:
A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B
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Secondary Structure
None
DSSP
PSIPRED
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Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
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Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
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ClustalW
PNG
Tyrosine-protein phosphatase non-receptor type 11
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