SMTL ID : 8t6g.1 (1 other biounit)

Identification of GDC-1971 (RLY-1971), a SHP2 inhibitor designed for the treatment of solid tumors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.112, E.196, K.199, Q.258, K.261 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:Q.258, A:Q.258 Water bridges: A:R.112, A:W.113, A:K.199, A:K.199, A:K.199, A:K.199, A:K.199, A:Q.257, A:Q.257 Salt bridges: A:R.112, A:K.199, A:K.261 SO4.2: 3 residues within 4Å: Chain A: K.132, N.218, R.221 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.218 Water bridges: A:S.135, A:P.216 Salt bridges: A:K.132, A:R.221 SO4.3: 4 residues within 4Å: Chain A: R.139, S.141, Q.142, S.143 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.142, A:S.143 Salt bridges: A:R.139 SO4.4: 7 residues within 4Å: Chain A: G.14, R.33, S.35, K.36, S.37, T.43, K.56 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.14, A:S.35, A:K.36, A:S.37 Salt bridges: A:R.33, A:K.56 SO4.5: 2 residues within 4Å: Chain A: K.71, Y.280 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.71, A:K.281 Salt bridges: A:K.71 SO4.6: 5 residues within 4Å: Chain A: Y.264, S.265, R.266, K.267, Q.270 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.266, A:Q.270 Salt bridges: A:R.266, A:K.267

1 x YT2: (1S)-1-{6-[(1S)-1-amino-1,3-dihydrospiro[indene-2,4'-piperidin]-1'-yl]-3-(3,4-dihydro-1,5-naphthyridin-1(2H)-yl)-1H-pyrazolo[3,4-b]pyrazin-5-yl}ethan-1-ol(Non-covalent)

YT2.7: 23 residues within 4Å: Chain A: T.109, S.110, E.111, R.112, F.114, H.115, P.216, L.217, N.218, T.219, T.220, V.244, K.245, Q.246, E.250, E.251, T.254, L.255, Q.258, D.490, P.492, K.493, Q.496 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:R.112, A:E.250, A:E.250, A:Q.258, A:K.493, A:Q.496 Hydrogen bonds: A:T.109, A:T.219, A:T.220, A:T.220, A:E.251, A:T.254 Water bridges: A:R.112, A:R.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taylor, A.M. et al., Identification of GDC-1971 (RLY-1971), a SHP2 Inhibitor Designed for the Treatment of Solid Tumors. J.Med.Chem. (2023)

Release Date

2023-10-11

Peptides

Tyrosine-protein phosphatase non-receptor type 11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein phosphatase non-receptor type 11

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