SMTL ID : 6bmw.1 (1 other biounit)

Non-receptor Protein Tyrosine Phosphatase SHP2 in Complex with Allosteric Inhibitors SHP099 and SHP504

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 5OD: 6-(4-azanyl-4-methyl-piperidin-1-yl)-3-[2,3-bis(chloranyl)phenyl]pyrazin-2-amine(Non-covalent)

5OD.1: 15 residues within 4Å: Chain A: T.109, E.111, R.112, F.114, H.115, T.219, T.220, E.250, E.251, T.254, L.255, Q.258, P.492, K.493, Q.496 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.492, A:P.492, A:K.493 Hydrogen bonds: A:F.114, A:E.251, A:T.254 Halogen bonds: A:T.254

1 x DZS: 3-{4-[(2-chlorophenyl)methyl]-5-oxo-4,5-dihydro[1,2,4]triazolo[4,3-a]quinazolin-1-yl}-4-hydroxybenzoic acid(Non-covalent)

DZS.2: 12 residues within 4Å: Chain A: Q.80, Y.81, E.84, H.85, L.263, Y.264, S.265, R.266, K.267, Q.270, N.282, L.284 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Q.80, A:E.84, A:Q.270 Hydrogen bonds: A:Q.80, A:Q.80, A:R.266, A:R.266, A:Q.270 Salt bridges: A:K.267 pi-Stacking: A:Y.81 pi-Cation interactions: A:R.266 Halogen bonds: A:N.282

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 4 residues within 4Å: Chain A: R.112, E.196, Q.258, K.261 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.196, A:Q.258, A:Q.258 Water bridges: A:K.199, A:K.199 Salt bridges: A:R.112, A:K.261 PO4.4: 5 residues within 4Å: Chain A: R.33, P.34, S.35, K.36, T.43 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.36 Salt bridges: A:R.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fodor, M. et al., Dual Allosteric Inhibition of SHP2 Phosphatase. ACS Chem. Biol. (2018)

Release Date

2018-01-17

Peptides

Tyrosine-protein phosphatase non-receptor type 11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein phosphatase non-receptor type 11

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