SMTL ID : 5mx7.1

1a,20S-dihydroxyvitamin D3 VDR complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

hetero-2-2-mer

Ligands

2 x D3V: 1a,20S-dihydroxyvitamin D3(Non-covalent)

D3V.1: 30 residues within 4Å: Chain A: Y.22, Y.26, F.29, L.102, L.105, A.106, L.108, V.109, S.112, I.143, I.146, M.147, R.149, S.150, S.153, W.161, C.163, Y.170, V.175, A.178, H.180, L.184, L.185, L.188, H.270, Y.274, L.277, L.287, V.291, F.295 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.108, A:I.146, A:W.161, A:V.175, A:L.184, A:L.277, A:L.287 Hydrogen bonds: A:Y.22, A:S.112, A:R.149, A:S.153, A:S.153 D3V.2: 30 residues within 4Å: Chain C: Y.22, Y.26, F.29, L.102, L.105, A.106, L.108, V.109, S.112, I.143, I.146, M.147, R.149, S.150, S.153, W.161, C.163, Y.170, V.175, A.178, H.180, L.184, L.185, L.188, H.270, Y.274, L.277, L.287, V.291, F.295 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:L.108, C:I.146, C:W.161, C:V.175, C:L.184, C:L.277, C:L.287 Hydrogen bonds: C:Y.22, C:R.149, C:S.153, C:S.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, Z. et al., 1 alpha,20S-Dihydroxyvitamin D3 Interacts with Vitamin D Receptor: Crystal Structure and Route of Chemical Synthesis. Sci Rep (2017)

Release Date

2017-11-29

Peptides

Vitamin D3 receptor A: AC
Nuclear receptor coactivator 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A1

C
A1

B
B1

D
B1

Vitamin D3 receptor A

Nuclear receptor coactivator 1

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