SMTL ID : 4fhh.1

Development of synthetically accessible non-secosteroidal hybrid molecules combining vitamin D receptor agonism and histone deacetylase inhibition

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 0U3: N-hydroxy-2-{4-[3-(4-{[(2S)-2-hydroxy-3,3-dimethylbutyl]oxy}-3-methylphenyl)pentan-3-yl]-2-methylphenoxy}acetamide(Non-covalent)

0U3.1: 24 residues within 4Å: Chain A: Y.22, L.102, L.105, A.106, L.108, V.109, Y.111, S.112, I.146, M.147, R.149, S.150, S.153, W.161, C.163, Y.170, V.175, H.180, L.184, H.270, Y.274, L.277, L.287, V.291 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.102, A:L.105, A:L.108, A:V.109, A:I.146, A:W.161, A:W.161, A:Y.170, A:V.175, A:V.175, A:L.184, A:Y.274, A:L.277, A:L.287, A:V.291 Hydrogen bonds: A:S.112, A:S.112, A:S.112, A:R.149, A:H.270 0U3.2: 24 residues within 4Å: Chain C: Y.22, L.102, L.105, A.106, L.108, V.109, Y.111, S.112, I.146, M.147, R.149, S.150, S.153, W.161, C.163, Y.170, V.175, H.180, L.184, H.270, Y.274, L.277, L.287, V.291 20 PLIP interactions: 20 interactions with chain C Hydrophobic interactions: C:L.102, C:L.105, C:L.108, C:V.109, C:I.146, C:W.161, C:W.161, C:Y.170, C:V.175, C:V.175, C:L.184, C:Y.274, C:L.277, C:L.287, C:V.291 Hydrogen bonds: C:S.112, C:S.112, C:S.112, C:R.149, C:H.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fischer, J. et al., Synthetically accessible non-secosteroidal hybrid molecules combining vitamin d receptor agonism and histone deacetylase inhibition. Chem.Biol. (2012)

Release Date

2012-09-19

Peptides

Vitamin D3 receptor A: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Vitamin D3 receptor A

Nuclear receptor coactivator 2

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