SMTL ID : 5ow7.1

VDR complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-mer

Ligands

2 x AYK: (3~{S})-3-[(1~{S},3~{a}~{S},4~{E},7~{a}~{S})-7~{a}-methyl-4-[(2~{Z})-2-[(5~{S})-2-methylidene-5-oxidanyl-cyclohexylidene]ethylidene]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-1-yl]-3-oxidanyl-~{N}-propan-2-yl-butanamide(Non-covalent)

AYK.1: 19 residues within 4Å: Chain A: Y.24, Y.28, L.104, L.107, L.110, V.111, S.114, I.148, R.151, S.152, S.155, W.163, C.165, V.177, A.180, H.182, L.186, H.272, F.297 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.24, A:L.104, A:L.107, A:L.110, A:W.163, A:V.177, A:A.180, A:L.186 Hydrogen bonds: A:Y.24, A:S.155, A:S.155 AYK.2: 19 residues within 4Å: Chain C: Y.24, Y.28, L.104, L.107, L.110, V.111, S.114, I.148, R.151, S.152, S.155, W.163, C.165, V.177, A.180, H.182, L.186, H.272, F.297 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:Y.24, C:L.104, C:L.107, C:L.110, C:W.163, C:V.177, C:A.180, C:L.186 Hydrogen bonds: C:S.155, C:S.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, Z. et al., Investigation of 20S-hydroxyvitamin D3 analogs and their 1 alpha-OH derivatives as potent vitamin D receptor agonists with anti-inflammatory activities. Sci Rep (2018)

Release Date

2018-02-07

Peptides

Vitamin D3 receptor A: AC
Nuclear receptor coactivator 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Vitamin D3 receptor A

Nuclear receptor coactivator 1

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