SMTL ID : 5nmb.1

Structure-activity relationship study of vitamin D analogs with oxolane group in their side chain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 9CZ: (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(1~{S})-1-[(2~{S},5~{R})-5-(2-oxidanylpropan-2-yl)oxolan-2-yl]ethyl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol(Non-covalent)

9CZ.1: 17 residues within 4Å: Chain A: Y.24, Y.28, L.107, L.110, V.111, S.114, I.148, R.151, S.152, S.155, W.163, C.165, V.177, H.182, H.272, L.289, F.297 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.24, A:L.107, A:L.110, A:W.163, A:V.177, A:V.177, A:L.289, A:F.297 Hydrogen bonds: A:Y.24, A:R.151, A:H.182 9CZ.2: 17 residues within 4Å: Chain C: Y.24, Y.28, L.107, L.110, V.111, S.114, I.148, R.151, S.152, S.155, W.163, C.165, V.177, H.182, H.272, L.289, F.297 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:Y.24, C:L.107, C:L.110, C:W.163, C:V.177, C:V.177, C:L.289, C:F.297 Hydrogen bonds: C:Y.24, C:Y.24, C:R.151, C:H.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Belorusova, A.Y. et al., Structure-activity relationship study of vitamin D analogs with oxolane group in their side chain. Eur J Med Chem (2017)

Release Date

2017-05-24

Peptides

Vitamin D3 receptor A: AC
Nuclear receptor coactivator 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A2

C
A2

B
B2

D
B2

Vitamin D3 receptor A

Nuclear receptor coactivator 1

Related Entries With Identical Sequence