SMTL ID : 5lga.1

Structural analysis and biological activities of BXL0124, a Gemini analog of Vitamin D

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 6VH: (1~{R},3~{S},5~{Z})-5-[2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(6~{R})-1,1,1-tris(fluoranyl)-10-methyl-2,10-bis(oxidanyl)-2-(trifluoromethyl)undeca-3,8-diyn-6-yl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol(Non-covalent)

6VH.1: 26 residues within 4Å: Chain A: Y.22, Y.26, F.29, L.102, L.105, A.106, L.108, V.109, S.112, I.143, R.149, S.150, S.153, W.161, C.163, V.175, A.178, H.180, L.184, L.188, H.270, Y.274, L.277, L.287, V.291, F.295 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.29, A:L.108, A:I.143, A:W.161, A:V.175, A:V.175, A:L.184 Hydrogen bonds: A:Y.22, A:Y.22, A:S.112, A:R.149, A:S.153, A:H.270 Halogen bonds: A:A.178 6VH.2: 26 residues within 4Å: Chain C: Y.22, Y.26, F.29, L.102, L.105, A.106, L.108, V.109, S.112, I.143, R.149, S.150, S.153, W.161, C.163, V.175, A.178, H.180, L.184, L.188, H.270, Y.274, L.277, L.287, V.291, F.295 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:F.29, C:L.108, C:I.143, C:W.161, C:V.175, C:V.175, C:L.184 Hydrogen bonds: C:Y.22, C:S.112, C:R.149, C:S.153, C:H.270 Halogen bonds: C:A.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Belorusova, A.Y. et al., Structural analysis and biological activities of BXL0124, a gemini analog of vitamin D. J. Steroid Biochem. Mol. Biol. (2017)

Release Date

2016-10-19

Peptides

Vitamin D3 receptor A: AC
SRC-2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Vitamin D3 receptor A

SRC-2

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