SMTL ID : 7oy4.1

VDR complex of a side-chain hydroxylated derivatives of lithocholic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 2WV: (3S,6R)-6-[(3R,5R,8R,9S,10S,13R,14S,17R)-10,13-dimethyl-3-(2-methyl-2-oxidanyl-propyl)-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]heptane-1,3-diol(Non-covalent)

2WV.1: 20 residues within 4Å: Chain A: Y.24, F.31, L.104, L.110, S.114, I.145, R.151, S.152, S.155, W.163, C.165, Y.172, V.177, H.182, L.186, L.187, H.272, Y.276, L.279, V.293 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.31, A:L.104, A:L.110, A:I.145, A:W.163, A:Y.172, A:L.186, A:L.187, A:Y.276, A:L.279, A:V.293 Hydrogen bonds: A:Y.24, A:R.151, A:S.155, A:H.182 2WV.2: 20 residues within 4Å: Chain C: Y.24, F.31, L.104, L.110, S.114, I.145, R.151, S.152, S.155, W.163, C.165, Y.172, V.177, H.182, L.186, L.187, H.272, Y.276, L.279, V.293 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:F.31, C:L.104, C:L.110, C:I.145, C:W.163, C:Y.172, C:L.186, C:L.187, C:Y.276, C:L.279, C:V.293 Hydrogen bonds: C:Y.24, C:Y.24, C:R.151, C:S.155, C:H.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gonzalez, C.M. et al., Design, synthesis and evaluation of side-chain hydroxylated derivatives of lithocholic acid as potent agonists of the vitamin D receptor (VDR). Bioorg.Chem. (2021)

Release Date

2021-09-01

Peptides

Vitamin D3 receptor A: AC
Nuclear receptor coactivator 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Vitamin D3 receptor A

Nuclear receptor coactivator 1

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