SMTL ID : 2hcd.1

Crystal structure of the ligand binding domain of the Vitamin D nuclear receptor in complex with Gemini and a coactivator peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-2-2-mer

Ligands

2 x BIV: 21-NOR-9,10-SECOCHOLESTA-5,7,10(19)-TRIENE-1,3,25-TRIOL, 20-(4-HYDROXY-4-METHYLPENTYL)-, (1A,3B,5Z,7E)(Non-covalent)

BIV.1: 25 residues within 4Å: Chain A: Y.24, Y.28, F.31, L.107, L.110, V.111, S.114, I.148, M.149, R.151, S.152, S.155, W.163, C.165, V.177, A.180, H.182, L.186, L.187, L.190, L.268, E.271, H.272, Q.275, Y.276 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.31, A:L.107, A:L.110, A:I.148, A:W.163, A:W.163, A:W.163, A:V.177, A:L.190, A:L.190, A:L.268, A:E.271, A:H.272, A:Y.276 Hydrogen bonds: A:Y.24, A:S.114, A:R.151, A:R.151, A:S.155, A:H.182 BIV.2: 25 residues within 4Å: Chain C: Y.24, Y.28, F.31, L.107, L.110, V.111, S.114, I.148, M.149, R.151, S.152, S.155, W.163, C.165, V.177, A.180, H.182, L.186, L.187, L.190, L.268, E.271, H.272, Q.275, Y.276 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:F.31, C:L.107, C:L.110, C:I.148, C:W.163, C:W.163, C:W.163, C:V.177, C:L.190, C:L.190, C:L.268, C:E.271, C:H.272, C:Y.276 Hydrogen bonds: C:Y.24, C:Y.24, C:S.114, C:R.151, C:R.151, C:S.155, C:H.182, C:H.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ciesielski, F. et al., Adaptability of the Vitamin D nuclear receptor to the synthetic ligand Gemini: remodelling the LBP with one side chain rotation. J.Steroid Biochem.Mol.Biol. (2007)

Release Date

2007-05-01

Peptides

Vitamin D receptor: AC
SRC-1 from Nuclear receptor coactivator 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Vitamin D receptor

SRC-1 from Nuclear receptor coactivator 1

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