SMTL ID : 5wr0.1

Huisgen cycloaddition for PPARg-LBD labeling by soaking method

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

1 x 8Y0: (E)-N-[(3E)-2-oxo-16-(8-{6-[(trifluoroacetyl)amino]hexanoyl}-8,9-dihydro-1H-dibenzo[b,f][1,2,3]triazolo[4,5-d]azocin-1-yl)hexadec-3-en-1-ylidene]glycine(Covalent)

8Y0.1: 16 residues within 4Å: Chain A: K.62, R.79, F.81, G.83, C.84, Q.85, F.86, R.87, S.88, Y.126, S.141, M.163, H.248, L.252, L.264, Y.272 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:K.62, A:R.79, A:R.79, A:R.87 Hydrogen bonds: A:Q.85, A:S.88, A:Y.126, A:Y.272 Salt bridges: A:H.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kojima, H. et al., On-site reaction for PPAR gamma modification using a specific bifunctional ligand. Bioorg. Med. Chem. (2017)

Release Date

2017-11-22

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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