SMTL ID : 9nih.1

Crystal structure of HLA-DR4 presenting citrullinated Tenascin C peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.118, T.120, R.164, E.166 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.120 NAG.3: 3 residues within 4Å: Chain B: N.19, E.22, R.23 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.19, B:R.23

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Ligands: GOL.4 No protein-ligand interaction detected (PLIP) GOL.4: 1 residues within 4Å: Ligands: GOL.2 No protein-ligand interaction detected (PLIP) GOL.5: 4 residues within 4Å: Chain B: E.35, E.36, V.50, T.51 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.36, B:E.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dao, H.D. et al., Crystal structure of HLA-DR4 presenting citrullinated Tenascin C peptide. To Be Published

Release Date

2025-05-21

Peptides

HLA class II histocompatibility antigen, DR alpha chain: A
HLA class II histocompatibility antigen DR beta chain: B
Tenascin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

HLA class II histocompatibility antigen, DR alpha chain

HLA class II histocompatibility antigen DR beta chain

Tenascin

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