SMTL ID : 6ftj.1

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
159 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
5 x ZN: ZINC ION(Non-covalent)
1 x 9UB: [(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]methyl-[oxidanyl-[(2~{Z},6~{Z},10~{Z})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenoxy]phosphoryl]oxy-phosphinic acid(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Braunger, K. et al., Structural basis for coupling protein transport and N-glycosylation at the mammalian endoplasmic reticulum. Science (2018)
Release Date
2018-03-21
Peptides
uL2: A
uL3: B
Ribosomal protein L4: C
60S ribosomal protein L5: D
60S ribosomal protein L6: E
Ul30: F
uL8: G
uL6: H
Ribosomal protein L10 (Predicted): I
Ribosomal protein L11: J
eL13: K
Ribosomal protein L14: L
Ribosomal protein L15: M
uL13: N
uL22: O
uL14: P
eL19: Q
eL20: R
eL21: S
Ribosomal protein L22: T
uL14: U
Ribosomal protein L24: V
uL23: W
Ribosomal protein L26: X
60S ribosomal protein L27: Y
uL15: Z
60S ribosomal protein L29: 0
eL30: 1
eL31: 2
eL32: 3
eL33: 4
eL34: 5
uL29: 6
60S ribosomal protein L36: 7
Ribosomal protein L37: 8
eL38: 9
eL39: a
eL40: b
60s ribosomal protein l41: c
eL42: d
Ribosomal protein L37a: e
eL28: f
60S acidic ribosomal protein P0: g
Ribosomal protein L12: h
Protein transport protein Sec61 subunit alpha isoform 1: l
Protein transport protein Sec61 subunit gamma: m
Protein transport protein Sec61 subunit beta: n
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,RPN1: o
TMEM258: p
Oligosaccharyltransferase complex subunit OSTC: q
OST4: r
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A: s
DAD1: t
OST48: u
RPN2: v
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
G
H
H
I
I
J
J
K
L
L
M
M
N
N
O
O
P
P
Q
Q
R
R
S
S
T
T
U
U
V
V
W
W
X
X
Y
Y
Z
Z
a
0
b
1
c
2
d
3
e
4
f
5
g
6
h
7
i
8
j
9
k
a
l
b
m
c
n
d
o
e
p
f
r
g
s
h
t
l
x
m
y
n
z
o
1
p
2
q
3
r
4
s
5
t
6
u
7
v
8
Membrane
We predict this structure to be a membrane protein.

uL2

uL3

Ribosomal protein L4

60S ribosomal protein L5

60S ribosomal protein L6

Ul30

uL8

uL6

Ribosomal protein L10 (Predicted)

Ribosomal protein L11

eL13

Ribosomal protein L14

Ribosomal protein L15

uL13

uL22

uL14

eL19

eL20

eL21

Ribosomal protein L22

uL14

Ribosomal protein L24

uL23

Ribosomal protein L26

60S ribosomal protein L27

uL15

60S ribosomal protein L29

eL30

eL31

eL32

eL33

eL34

uL29

60S ribosomal protein L36

Ribosomal protein L37

eL38

eL39

eL40

60s ribosomal protein l41

eL42

Ribosomal protein L37a

eL28

60S acidic ribosomal protein P0

Ribosomal protein L12

Protein transport protein Sec61 subunit alpha isoform 1

Protein transport protein Sec61 subunit gamma

Protein transport protein Sec61 subunit beta

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,RPN1

TMEM258

Oligosaccharyltransferase complex subunit OSTC

OST4

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A

DAD1

OST48

RPN2

Related Entries With Identical Sequence

1izl.1 | 3j7o.1 | 3j7q.1 | 3jc2.1 | 4pi0.1 | 4pi2.1 | 4uq8.1 | 4v3p.21 | 4wz7.1 | 5a6u.1 | 5gae.1 | 5lqx.1 | 5lqy.1 | 5lqz.1 | 5luf.1 | 5yq7.1 | 6d90.38 | 6d9j.36 | 6d9j.38 | 6e11.1 | 6frk.1 | 6ftg.1 | 6fti.1 | 6gz3.43 | 6gz3.46 | 6gz3.48 | 6gz3.65 | 6gz3.69 | 6gz3.70 | 6gz3.74  more...