SMTL ID : 9jtx.1

Factor inhibiting HIF-1 alpha in complex with Zn(II) and 2-(4-hydroxy-2-oxo-1-(thiazol-4-ylmethoxy)-1,2-dihydroquinoline-3-carboxamido)-2-methylpropanoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: T.97, H.98, R.143 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.33, A:R.33 Salt bridges: A:H.98, A:R.143 SO4.2: 5 residues within 4Å: Chain A: D.222, F.224, E.225, A.312, K.315 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.225 SO4.3: 4 residues within 4Å: Chain A: K.107, D.237, R.320, K.324 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.107, A:R.320, A:K.324 SO4.6: 4 residues within 4Å: Chain A: R.138, G.140, E.141, E.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.141, A:E.142 Salt bridges: A:R.138 SO4.7: 2 residues within 4Å: Chain A: K.311, A.312 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.312 Water bridges: A:H.313 SO4.8: 1 residues within 4Å: Chain A: Q.148 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.148 Water bridges: A:T.149 SO4.9: 5 residues within 4Å: Chain A: R.143, E.192, G.193, L.285, N.286 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.192, A:N.286 Salt bridges: A:R.143

1 x 01: 2-methyl-2-[[4-oxidanyl-2-oxidanylidene-1-(1,3-thiazol-4-ylmethoxy)quinolin-3-yl]carbonylamino]propanoic acid

01.4: 15 residues within 4Å: Chain A: Y.102, Y.145, Q.147, L.188, T.196, H.199, D.201, F.207, K.214, R.238, H.279, I.281, N.294, W.296 Ligands: ZN.5 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.102, A:L.188, A:T.196 Hydrogen bonds: A:Y.145, A:Q.147, A:T.196, A:R.238 Water bridges: A:N.294 Salt bridges: A:K.214 pi-Cation interactions: A:R.238

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: H.199, D.201, H.279 Ligands: 01.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.199, A:D.201, A:H.279, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Corner, T.P. et al., Derivatives of the Clinically Used HIF Prolyl Hydroxylase Inhibitor Desidustat Are Efficient Inhibitors of Human gamma-Butyrobetaine Hydroxylase. J.Med.Chem. (2025)

Release Date

2025-04-30

Peptides

Hypoxia-inducible factor 1-alpha inhibitor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hypoxia-inducible factor 1-alpha inhibitor

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