SMTL ID : 6i47.1

Structure of P. aeruginosa LpxC with compound 10: (2RS)-4-(5-(2-Fluoro-4-methoxyphenyl)-1-oxoisoindolin-2-yl)-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.78, T.190, H.237, D.241 Ligands: UNY.2, UNZ.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.78, A:H.237, A:D.241, A:D.241

1 x UNY: (2~{R})-4-[6-(2-fluoranyl-4-methoxy-phenyl)-3-oxidanylidene-1~{H}-isoindol-2-yl]-2-methyl-2-methylsulfonyl-~{N}-oxidanyl-butanamide(Non-covalent)

UNY.2: 21 residues within 4Å: Chain A: L.18, M.62, E.77, H.78, T.190, F.191, G.192, F.193, M.194, I.197, L.200, A.206, G.209, S.210, V.216, H.237, K.238, D.241, H.264 Ligands: ZN.1, UNZ.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.197, A:I.197, A:L.200, A:A.206, A:V.216, A:V.216 Hydrogen bonds: A:H.78, A:H.264

1 x UNZ: (2~{S})-4-[6-(2-fluoranyl-4-methoxy-phenyl)-3-oxidanylidene-1~{H}-isoindol-2-yl]-2-methyl-2-methylsulfonyl-~{N}-oxidanyl-butanamide(Non-covalent)

UNZ.3: 23 residues within 4Å: Chain A: L.18, M.62, S.63, E.77, H.78, T.190, F.191, G.192, F.193, M.194, I.197, L.200, A.206, G.209, S.210, A.214, V.216, H.237, K.238, D.241, H.264 Ligands: ZN.1, UNY.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.197, A:I.197, A:L.200, A:A.206, A:V.216, A:V.216 Hydrogen bonds: A:H.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Surivet, J.P. et al., Discovery of Novel Inhibitors of LpxC Displaying Potent in Vitro Activity against Gram-Negative Bacteria. J.Med.Chem. (2020)

Release Date

2019-12-18

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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