SMTL ID : 6i4a.1

Structure of P. aeruginosa LpxC with compound 18d: (2R)-N-Hydroxy-4-(6-((1-(hydroxymethyl)cyclopropyl)buta-1,3-diyn-1-yl)-3-oxo-1H-pyrrolo[1,2-c]imidazol-2(3H)-yl)-2-methyl-2-(methylsulfonyl)butanamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: E.77, H.78, T.190, H.237, D.241 Ligands: H2Q.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.78, A:H.237, A:D.241, A:D.241

1 x H2Q: (2~{R})-4-[6-[4-[1-(hydroxymethyl)cyclopropyl]buta-1,3-diynyl]-3-oxidanylidene-1~{H}-pyrrolo[1,2-c]imidazol-2-yl]-2-methyl-2-methylsulfonyl-~{N}-oxidanyl-butanamide(Non-covalent)

H2Q.2: 26 residues within 4Å: Chain A: L.18, H.19, M.62, S.63, T.75, E.77, H.78, T.190, F.191, G.192, M.194, I.197, L.200, R.201, A.206, G.209, S.210, V.211, A.214, V.216, L.223, H.237, K.238, D.241, H.264 Ligands: ZN.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.197, A:A.214 Hydrogen bonds: A:M.62, A:E.77, A:H.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Surivet, J.P. et al., Discovery of Novel Inhibitors of LpxC Displaying Potent in Vitro Activity against Gram-Negative Bacteria. J.Med.Chem. (2020)

Release Date

2019-12-18

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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