- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.20 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x F9F: 2-({[4-(TRIFLUOROMETHOXY)PHENYL]SULFONYL}AMINO)ETHYL DIHYDROGEN PHOSPHATE(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.3: 18 residues within 4Å:- Chain B: A.85, H.86, K.87, Q.114, T.190, C.230, V.231, G.232, G.233, G.234, S.235, N.236, G.303, L.304, A.348, E.350, S.377, G.378
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:A.85, B:K.87, B:A.348
- Hydrogen bonds: B:K.87, B:G.232, B:G.233, B:G.234, B:S.235, B:N.236, B:N.236, B:S.377
- Water bridges: B:T.190, B:T.190, B:S.235, B:S.235, B:A.237
- Salt bridges: B:H.86, B:K.87
- pi-Stacking: B:H.86
PLP.15: 18 residues within 4Å:- Chain D: A.85, H.86, K.87, Q.114, T.190, C.230, V.231, G.232, G.233, G.234, S.235, N.236, G.303, L.304, A.348, E.350, S.377, G.378
19 PLIP interactions:19 interactions with chain D- Hydrophobic interactions: D:A.85, D:K.87, D:A.348
- Hydrogen bonds: D:T.190, D:T.190, D:G.232, D:G.233, D:G.234, D:S.235, D:N.236, D:N.236, D:S.377
- Water bridges: D:K.87, D:S.235, D:S.235, D:A.237
- Salt bridges: D:H.86, D:K.87
- pi-Stacking: D:H.86
- 4 x CS: CESIUM ION(Non-covalent)
CS.4: 6 residues within 4Å:- Chain B: V.231, G.232, G.268, L.304, F.306, S.308
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:G.232
CS.12: 3 residues within 4Å:- Chain B: T.66, T.69, T.71
No protein-ligand interaction detected (PLIP)CS.16: 6 residues within 4Å:- Chain D: V.231, G.232, G.268, L.304, F.306, S.308
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:G.232
CS.24: 3 residues within 4Å:- Chain D: T.66, T.69, T.71
No protein-ligand interaction detected (PLIP)- 8 x BCN: BICINE(Non-covalent)
BCN.5: 6 residues within 4Å:- Chain B: G.259, H.260, E.263, T.328, D.329, D.330
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:T.328, B:D.330
- Water bridges: B:E.263, B:D.329, B:D.329
- Salt bridges: B:D.330
BCN.6: 8 residues within 4Å:- Chain B: T.248, S.249, V.250, G.251, L.252, G.320, R.321, D.323
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:S.249, B:L.252, B:L.252, B:R.321, B:R.321
- Salt bridges: B:R.321, B:D.323
BCN.7: 5 residues within 4Å:- Chain A: T.77
- Chain B: T.289, A.290, D.291, Q.293
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:A.290, B:D.291, B:D.291, B:D.291
- Water bridges: B:D.291
- Salt bridges: B:D.291
BCN.8: 2 residues within 4Å:- Chain B: R.363, E.364
3 PLIP interactions:3 interactions with chain B- Water bridges: B:R.363, B:E.364, B:E.364
BCN.17: 6 residues within 4Å:- Chain D: G.259, H.260, E.263, T.328, D.329, D.330
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:D.330, D:D.330
- Water bridges: D:E.263, D:D.329, D:D.330
- Salt bridges: D:D.330
BCN.18: 8 residues within 4Å:- Chain D: T.248, S.249, V.250, G.251, L.252, G.320, R.321, D.323
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:S.249, D:L.252, D:L.252, D:R.321, D:R.321
- Salt bridges: D:R.321, D:D.323
BCN.19: 5 residues within 4Å:- Chain C: T.77
- Chain D: T.289, A.290, D.291, Q.293
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:T.289, D:A.290, D:D.291, D:D.291
- Water bridges: D:D.291
- Salt bridges: D:D.291
BCN.20: 2 residues within 4Å:- Chain D: R.363, E.364
2 PLIP interactions:2 interactions with chain D- Water bridges: D:R.363, D:E.364
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.9: 4 residues within 4Å:- Chain B: D.225, K.368, E.369, Q.370
6 PLIP interactions:6 interactions with chain B- Water bridges: B:D.225, B:D.225, B:K.368, B:K.368, B:K.368, B:K.368
EDO.11: 4 residues within 4Å:- Chain B: T.3, L.4, L.5, N.6
No protein-ligand interaction detected (PLIP)EDO.21: 4 residues within 4Å:- Chain D: D.225, K.368, E.369, Q.370
6 PLIP interactions:6 interactions with chain D- Water bridges: D:D.225, D:D.225, D:K.368, D:K.368, D:K.368, D:K.368
EDO.23: 4 residues within 4Å:- Chain D: T.3, L.4, L.5, N.6
No protein-ligand interaction detected (PLIP)- 2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hilario, E. et al., High resolution Tryptophan Synthase crystal structure from Salmonella typhimurium in complex with F9 inhibitor in the alpha-site, Cesium ion at the metal coordination site and internal aldimine form. To be Published
- Release Date
- 2021-03-10
- Peptides
- Tryptophan synthase alpha chain: AC
Tryptophan synthase beta chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B
SMTL ID : 6wx3.1
High resolution Tryptophan Synthase crystal structure from Salmonella typhimurium in complex with F9 inhibitor in the alpha-site, Cesium ion at the metal coordination site and internal aldimine form.
Tryptophan synthase alpha chain
Toggle Identical (AC)Tryptophan synthase beta chain
Toggle Identical (BD)Related Entries With Identical Sequence
1a50.1 | 1a5s.1 | 1bks.1 | 1c29.1 | 1c8v.1 | 1c9d.1 | 1cw2.1 | 1cx9.1 | 1fuy.1 | 1k3u.1 | 1k7e.1 | 1k7f.1 | 1k7x.1 | 1k8x.1 | 1k8y.1 | 1k8z.1 | 1kfc.1 | 1kfj.1 | 1kfk.1 | 1qoq.1 | 1tjp.1 | 1ttp.1 | 1ttq.1 | 1ubs.1 | 2cle.1 | 2clf.1 | 2clh.1 | 2cli.1 | 2cll.1 | 2clm.1 more...less...2clo.1 | 2j9x.1 | 2j9y.1 | 2rh9.1 | 2rhg.1 | 2trs.1 | 2tsy.1 | 2tys.1 | 2wsy.1 | 4hn4.1 | 4hpj.1 | 4hpx.1 | 4hpx.2 | 4ht3.1 | 4kkx.1 | 4wx2.1 | 4xug.1 | 4y6g.1 | 4zqc.1 | 5bw6.1 | 5cgq.1 | 6c73.1 | 6d0v.1 | 6duc.1 | 6dz4.1 | 6dzo.1 | 6o1h.1 | 6oso.1 | 6ouy.1 | 6vfd.1 | 6vnt.1 | 6wdu.1 | 6x0c.1 | 6xe3.1 | 6xin.1 | 6xnc.1 | 6xoy.1 | 6xrh.1 | 6xsy.1 | 6xt0.1 | 7jhw.1 | 7jll.1 | 7jmq.1 | 7jmq.2 | 7jqw.1 | 7jtt.1 | 7k0b.1 | 7k5a.1 | 7ka1.1 | 7kbn.1 | 7kh6.1 | 7ki7.1 | 7kmc.1 | 7kq9.1 | 7kqf.1 | 7ku9.1 | 7kwv.1 | 7kxc.1 | 7kyt.1 | 7l03.1 | 7l1h.1 | 7l47.1 | 7l4d.1 | 7l5h.1 | 7lev.1 | 7lgx.1 | 7lkl.1 | 7lpf.1 | 7lt4.1 | 7ltp.1 | 7lut.1 | 7lv5.1 | 7lvx.1 | 7lx1.1 | 7ly8.1 | 7m2l.1 | 7m3s.1 | 7m3s.2 | 7me8.1 | 7mt4.1 | 7mt5.1 | 7mt6.1 | 8b03.1 | 8b05.1 | 8b06.1 | 8b08.1